Phenotype measure:   Rusyn5   liver_Mttp_hfe

ID, description, units MPD:43072   liver_Mttp_hfe   liver Mttp, mRNA abundance relative to high-fat-only group   [%]
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   6 strains     sex: m     age: 8-14wks
Procedure RNA expression profiling
Ontology mappings


  STRAIN COMPARISON PLOT
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Rusyn5 - liver Mttp, mRNA abundance relative to high-fat-only group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested6 strains
Mean of the strain means118   %
Median of the strain means116   %
SD of the strain means± 23.3
Coefficient of variation (CV)0.196
Min–max range of strain means93.9   –   148   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 5 8061.1185 1612.2237 15.3363 0.0001
Residuals 12 1261.4997 105.125


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 148.0 8.29   3 4.78 0.0561 138.0, 155.0 1.27
C57BL/10J m 106.0 6.26   3 3.61 0.0588 100.0, 113.0 -0.54
KK/HlJ m 93.9 6.88   3 3.97 0.0732 86.0, 98.8 -1.06
NZW/LacJ m 95.9 11.3   3 6.52 0.118 83.1, 104.0 -0.97
PWD/PhJ m 126.0 11.6   3 6.72 0.0923 119.0, 140.0 0.32
WSB/EiJ m 141.0 14.6   3 8.41 0.103 130.0, 158.0 0.97


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 147.56 5.9196 160.4577 134.6623
C57BL/10J m 106.47 5.9196 119.3677 93.5723
KK/HlJ m 93.8933 5.9196 106.791 80.9956
NZW/LacJ m 95.8867 5.9196 108.7844 82.989
PWD/PhJ m 126.1333 5.9196 139.031 113.2356
WSB/EiJ m 141.3633 5.9196 154.261 128.4656




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.