Phenotype measure:   Rusyn5   liver_Mtr_hfe

ID, description, units MPD:43070   liver_Mtr_hfe   liver Mtr, mRNA abundance relative to high-fat-only group   [%]
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure RNA expression profiling
Ontology mappings


  STRAIN COMPARISON PLOT
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Rusyn5 - liver Mtr, mRNA abundance relative to high-fat-only group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means79.1   %
Median of the strain means72.0   %
SD of the strain means± 30.3
Coefficient of variation (CV)0.383
Min–max range of strain means37.1   –   149   %
Mean sample size per strain2.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 34151.4414 2627.034 9.2878 < 0.0001
Residuals 26 7354.028 282.8472


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 104.0 10.2   2   7.22 0.0979 97.0, 111.0 0.82
AKR/J m 71.2 23.8   3 13.8 0.335 46.2, 93.8 -0.26
BALB/cByJ m 54.6 12.3   3 7.09 0.225 40.4, 62.1 -0.81
BALB/cJ m 72.6 1.92   3 1.11 0.0265 71.2, 74.8 -0.22
BTBR T+ Itpr3tf/J m 71.5 11.9   3 6.87 0.166 60.1, 83.9 -0.25
C3H/HeJ m 79.0 7.9   3 4.56 0.1 70.8, 86.5 0.0
C57BL/10J m 57.2 5.04   3 2.91 0.0881 53.2, 62.8 -0.72
DBA/2J m 54.7 39.6   3 22.8 0.723 26.6, 100.0 -0.81
FVB/NJ m 47.3 17.4   3 10.0 0.367 27.4, 59.6 -1.05
KK/HlJ m 37.1 16.0   3 9.26 0.432 20.1, 52.0 -1.39
MOLF/EiJ m 149.0 6.72   3 3.88 0.045 144.0, 157.0 2.31
NZW/LacJ m 101.0 18.3   3 10.6 0.182 83.9, 120.0 0.72
PWD/PhJ m 110.0 16.6   2   11.7 0.151 97.9, 121.0 1.02
WSB/EiJ m 98.5 5.48   3 3.16 0.0556 92.7, 104.0 0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 104.225 11.8922 128.6697 79.7803
AKR/J m 71.1767 9.7099 91.1357 51.2177
BALB/cByJ m 54.55 9.7099 74.509 34.591
BALB/cJ m 72.58 9.7099 92.539 52.621
BTBR T+ Itpr3tf/J m 71.52 9.7099 91.479 51.561
C3H/HeJ m 78.9533 9.7099 98.9123 58.9943
C57BL/10J m 57.1733 9.7099 77.1323 37.2143
DBA/2J m 54.7167 9.7099 74.6757 34.7577
FVB/NJ m 47.2567 9.7099 67.2157 27.2977
KK/HlJ m 37.0867 9.7099 57.0457 17.1277
MOLF/EiJ m 149.0833 9.7099 169.0423 129.1243
NZW/LacJ m 100.86 9.7099 120.819 80.901
PWD/PhJ m 109.625 11.8922 134.0697 85.1803
WSB/EiJ m 98.51 9.7099 118.469 78.551




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.