Phenotype measure:   Rusyn5   liver_Mat1a_hfe

ID, description, units MPD:43066   liver_Mat1a_hfe   liver Mat1a, mRNA abundance relative to high-fat-only group   [%]
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure RNA expression profiling
Ontology mappings

  STRAIN COMPARISON PLOT
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Rusyn5 - liver Mat1a, mRNA abundance relative to high-fat-only group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means210   %
Median of the strain means194   %
SD of the strain means± 107
Coefficient of variation (CV)0.508
Min–max range of strain means94.0   –   474   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 443756.1229 34135.0864 14.15 < 0.0001
Residuals 28 67546.4889 2412.3746


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 474.0 73.1   3 42.2 0.154 407.0, 552.0 2.48
AKR/J m 192.0 50.2   3 29.0 0.262 140.0, 240.0 -0.17
BALB/cByJ m 123.0 18.5   3 10.7 0.15 111.0, 145.0 -0.81
BALB/cJ m 197.0 72.2   3 41.7 0.367 118.0, 260.0 -0.12
BTBR T+ Itpr3tf/J m 364.0 54.5   3 31.5 0.149 313.0, 421.0 1.45
C3H/HeJ m 294.0 33.0   3 19.1 0.112 257.0, 321.0 0.79
C57BL/10J m 172.0 44.0   3 25.4 0.256 136.0, 221.0 -0.35
DBA/2J m 165.0 44.3   3 25.6 0.269 114.0, 191.0 -0.42
FVB/NJ m 97.7 28.9   3 16.7 0.296 80.7, 131.0 -1.05
KK/HlJ m 119.0 18.6   3 10.8 0.156 103.0, 140.0 -0.85
MOLF/EiJ m 204.0 62.5   3 36.1 0.307 132.0, 246.0 -0.05
NZW/LacJ m 94.0 4.82   3 2.78 0.0512 88.5, 96.8 -1.09
PWD/PhJ m 243.0 55.8   3 32.2 0.23 182.0, 292.0 0.31
WSB/EiJ m 197.0 64.6   3 37.3 0.328 143.0, 269.0 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 474.4033 28.3571 532.4902 416.3165
AKR/J m 191.5467 28.3571 249.6335 133.4598
BALB/cByJ m 123.4233 28.3571 181.5102 65.3365
BALB/cJ m 196.5767 28.3571 254.6635 138.4898
BTBR T+ Itpr3tf/J m 364.4 28.3571 422.4869 306.3131
C3H/HeJ m 294.1533 28.3571 352.2402 236.0665
C57BL/10J m 171.5933 28.3571 229.6802 113.5065
DBA/2J m 164.7433 28.3571 222.8302 106.6565
FVB/NJ m 97.71 28.3571 155.7969 39.6231
KK/HlJ m 119.4533 28.3571 177.5402 61.3665
MOLF/EiJ m 203.61 28.3571 261.6969 145.5231
NZW/LacJ m 94.01 28.3571 152.0969 35.9231
PWD/PhJ m 242.9167 28.3571 301.0035 184.8298
WSB/EiJ m 197.1733 28.3571 255.2602 139.0865




  GWAS USING LINEAR MIXED MODELS