Phenotype measure:   Rusyn5   liver_Gnmt_hfe

ID, description, units MPD:43064   liver_Gnmt_hfe   liver Gnmt, mRNA abundance relative to high-fat-only group   [%]
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure RNA expression profiling
Ontology mappings

  STRAIN COMPARISON PLOT
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Rusyn5 - liver Gnmt, mRNA abundance relative to high-fat-only group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means129   %
Median of the strain means134   %
SD of the strain means± 43.8
Coefficient of variation (CV)0.339
Min–max range of strain means48.0   –   205   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 74785.3973 5752.7229 8.9759 < 0.0001
Residuals 28 17945.5077 640.911


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 186.0 23.5   3 13.6 0.127 158.0, 199.0 1.3
AKR/J m 157.0 27.3   3 15.7 0.173 131.0, 186.0 0.64
BALB/cByJ m 89.6 7.79   3 4.5 0.0869 84.0, 98.5 -0.9
BALB/cJ m 136.0 17.4   3 10.0 0.128 123.0, 156.0 0.16
BTBR T+ Itpr3tf/J m 160.0 14.6   3 8.42 0.091 150.0, 177.0 0.71
C3H/HeJ m 110.0 18.1   3 10.4 0.164 91.2, 127.0 -0.44
C57BL/10J m 130.0 23.0   3 13.3 0.177 110.0, 155.0 0.02
DBA/2J m 126.0 16.1   3 9.28 0.128 114.0, 144.0 -0.07
FVB/NJ m 48.0 11.4   3 6.6 0.238 34.9, 55.9 -1.85
KK/HlJ m 136.0 28.1   3 16.2 0.207 116.0, 168.0 0.16
MOLF/EiJ m 136.0 34.2   3 19.8 0.251 98.0, 164.0 0.16
NZW/LacJ m 54.9 6.8   3 3.92 0.124 47.9, 61.4 -1.7
PWD/PhJ m 133.0 42.5   3 24.5 0.319 85.9, 168.0 0.09
WSB/EiJ m 205.0 45.2   3 26.1 0.22 169.0, 256.0 1.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 185.66 14.6163 215.6002 155.7198
AKR/J m 157.3567 14.6163 187.2969 127.4165
BALB/cByJ m 89.5733 14.6163 119.5135 59.6331
BALB/cJ m 136.13 14.6163 166.0702 106.1898
BTBR T+ Itpr3tf/J m 160.24 14.6163 190.1802 130.2998
C3H/HeJ m 110.2533 14.6163 140.1935 80.3131
C57BL/10J m 129.65 14.6163 159.5902 99.7098
DBA/2J m 125.7467 14.6163 155.6869 95.8065
FVB/NJ m 47.9867 14.6163 77.9269 18.0465
KK/HlJ m 135.7967 14.6163 165.7369 105.8565
MOLF/EiJ m 136.4667 14.6163 166.4069 106.5265
NZW/LacJ m 54.8933 14.6163 84.8335 24.9531
PWD/PhJ m 133.1767 14.6163 163.1169 103.2365
WSB/EiJ m 205.1333 14.6163 235.0735 175.1931




  GWAS USING LINEAR MIXED MODELS