Phenotype measure:   Rusyn5   liver_Cth_hfe

ID, description, units MPD:43060   liver_Cth_hfe   liver Cth, mRNA abundance relative to high-fat-only group   [%]
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure RNA expression profiling
Ontology mappings


  STRAIN COMPARISON PLOT
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Rusyn5 - liver Cth, mRNA abundance relative to high-fat-only group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means137   %
Median of the strain means135   %
SD of the strain means± 43.3
Coefficient of variation (CV)0.315
Min–max range of strain means60.3   –   211   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 73130.9655 5625.4589 5.7932 0.0001
Residuals 28 27189.2309 971.044


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 193.0 47.8   3 27.6 0.247 159.0, 248.0 1.29
AKR/J m 179.0 52.8   3 30.5 0.295 131.0, 235.0 0.96
BALB/cByJ m 106.0 23.1   3 13.3 0.219 86.7, 131.0 -0.72
BALB/cJ m 124.0 43.2   3 24.9 0.349 95.0, 174.0 -0.31
BTBR T+ Itpr3tf/J m 152.0 19.8   3 11.4 0.13 137.0, 174.0 0.34
C3H/HeJ m 175.0 37.9   3 21.9 0.217 150.0, 218.0 0.87
C57BL/10J m 115.0 18.6   3 10.8 0.163 96.6, 134.0 -0.51
DBA/2J m 146.0 15.1   3 8.69 0.103 137.0, 164.0 0.2
FVB/NJ m 60.3 4.2   3 2.42 0.0696 57.5, 65.1 -1.78
KK/HlJ m 102.0 25.1   3 14.5 0.246 73.1, 119.0 -0.82
MOLF/EiJ m 118.0 20.6   3 11.9 0.175 95.4, 136.0 -0.45
NZW/LacJ m 84.5 4.4   3 2.54 0.0521 80.2, 89.0 -1.22
PWD/PhJ m 156.0 35.2   3 20.3 0.226 133.0, 196.0 0.43
WSB/EiJ m 211.0 37.2   3 21.5 0.176 168.0, 237.0 1.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 193.13 17.9911 229.9832 156.2768
AKR/J m 179.0467 17.9911 215.8999 142.1935
BALB/cByJ m 105.7 17.9911 142.5532 68.8468
BALB/cJ m 123.9533 17.9911 160.8065 87.1001
BTBR T+ Itpr3tf/J m 151.6067 17.9911 188.4599 114.7535
C3H/HeJ m 174.6267 17.9911 211.4799 137.7735
C57BL/10J m 114.59 17.9911 151.4432 77.7368
DBA/2J m 146.24 17.9911 183.0932 109.3868
FVB/NJ m 60.3133 17.9911 97.1665 23.4601
KK/HlJ m 101.8767 17.9911 138.7299 65.0235
MOLF/EiJ m 117.9467 17.9911 154.7999 81.0935
NZW/LacJ m 84.51 17.9911 121.3632 47.6568
PWD/PhJ m 155.92 17.9911 192.7732 119.0668
WSB/EiJ m 211.1733 17.9911 248.0265 174.3201




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.