Phenotype measure:   Rusyn5   liver_Cebpa_hfe

ID, description, units MPD:43058   liver_Cebpa_hfe   liver Cebpa, mRNA abundance relative to high-fat-only group   [%]
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure RNA expression profiling
Ontology mappings


  STRAIN COMPARISON PLOT
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Rusyn5 - liver Cebpa, mRNA abundance relative to high-fat-only group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means130   %
Median of the strain means76.8   %
SD of the strain means± 112
Coefficient of variation (CV)0.861
Min–max range of strain means40.6   –   411   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 482717.4319 37132.1101 17.1823 < 0.0001
Residuals 27 58348.8111 2161.0671


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 40.6 9.36   3 5.4 0.23 31.1, 49.8 -0.8
AKR/J m 88.9 35.8   3 20.6 0.402 65.0, 130.0 -0.37
BALB/cByJ m 53.6 13.8   3 7.95 0.257 38.2, 64.7 -0.68
BALB/cJ m 78.8 48.6   3 28.1 0.617 45.6, 135.0 -0.46
BTBR T+ Itpr3tf/J m 70.8 24.8   3 14.3 0.35 42.5, 88.5 -0.53
C3H/HeJ m 74.7 27.6   3 15.9 0.37 43.4, 95.7 -0.49
C57BL/10J m 49.5 26.5   3 15.3 0.535 32.0, 80.0 -0.72
DBA/2J m 51.3 39.1   3 22.6 0.763 6.82, 80.4 -0.7
FVB/NJ m 73.9 24.9   2   17.6 0.337 56.3, 91.5 -0.5
KK/HlJ m 168.0 47.2   3 27.3 0.282 124.0, 218.0 0.34
MOLF/EiJ m 270.0 37.4   3 21.6 0.138 228.0, 299.0 1.26
NZW/LacJ m 110.0 10.7   3 6.18 0.0973 99.7, 121.0 -0.18
PWD/PhJ m 276.0 63.7   3 36.8 0.231 204.0, 324.0 1.31
WSB/EiJ m 411.0 116.0   3 67.2 0.283 276.0, 481.0 2.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 40.6033 26.8394 95.6733 0.0
AKR/J m 88.86 26.8394 143.93 33.79
BALB/cByJ m 53.63 26.8394 108.7 0.0
BALB/cJ m 78.8033 26.8394 133.8733 23.7333
BTBR T+ Itpr3tf/J m 70.8133 26.8394 125.8833 15.7433
C3H/HeJ m 74.7233 26.8394 129.7933 19.6533
C57BL/10J m 49.5 26.8394 104.57 0.0
DBA/2J m 51.3033 26.8394 106.3733 0.0
FVB/NJ m 73.92 32.8715 141.3667 6.4733
KK/HlJ m 167.6933 26.8394 222.7633 112.6233
MOLF/EiJ m 270.31 26.8394 325.38 215.24
NZW/LacJ m 109.8933 26.8394 164.9633 54.8233
PWD/PhJ m 275.7633 26.8394 330.8333 220.6933
WSB/EiJ m 410.53 26.8394 465.6 355.46




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.