Phenotype measure:   Rusyn5   liver_Ahcy_hfe

ID, description, units MPD:43054   liver_Ahcy_hfe   liver Ahcy, mRNA abundance relative to high-fat-only group   [%]
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure RNA expression profiling
Ontology mappings

  STRAIN COMPARISON PLOT
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Rusyn5 - liver Ahcy, mRNA abundance relative to high-fat-only group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means147   %
Median of the strain means145   %
SD of the strain means± 48.2
Coefficient of variation (CV)0.329
Min–max range of strain means67.6   –   221   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 90542.5417 6964.8109 6.6029 < 0.0001
Residuals 28 29534.6841 1054.8101


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 216.0 29.4   3 16.9 0.136 182.0, 234.0 1.43
AKR/J m 166.0 44.5   3 25.7 0.268 122.0, 211.0 0.4
BALB/cByJ m 89.5 21.2   3 12.2 0.236 76.8, 114.0 -1.19
BALB/cJ m 185.0 24.4   3 14.1 0.132 162.0, 211.0 0.79
BTBR T+ Itpr3tf/J m 221.0 38.4   3 22.2 0.174 179.0, 256.0 1.54
C3H/HeJ m 122.0 25.5   3 14.7 0.209 100.0, 150.0 -0.51
C57BL/10J m 126.0 20.0   3 11.6 0.159 110.0, 148.0 -0.43
DBA/2J m 154.0 32.6   3 18.8 0.211 123.0, 188.0 0.15
FVB/NJ m 67.6 11.0   3 6.36 0.163 60.5, 80.3 -1.64
KK/HlJ m 136.0 21.1   3 12.2 0.156 111.0, 149.0 -0.22
MOLF/EiJ m 178.0 58.4   3 33.7 0.328 116.0, 232.0 0.65
NZW/LacJ m 81.1 14.3   3 8.25 0.176 69.0, 96.9 -1.36
PWD/PhJ m 126.0 37.9   3 21.9 0.302 97.7, 169.0 -0.43
WSB/EiJ m 187.0 40.9   3 23.6 0.219 155.0, 233.0 0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 216.04 18.7511 254.4499 177.6301
AKR/J m 165.8267 18.7511 204.2365 127.4168
BALB/cByJ m 89.5467 18.7511 127.9565 51.1368
BALB/cJ m 185.23 18.7511 223.6399 146.8201
BTBR T+ Itpr3tf/J m 220.6967 18.7511 259.1065 182.2868
C3H/HeJ m 121.94 18.7511 160.3499 83.5301
C57BL/10J m 125.7267 18.7511 164.1365 87.3168
DBA/2J m 154.09 18.7511 192.4999 115.6801
FVB/NJ m 67.64 18.7511 106.0499 29.2301
KK/HlJ m 135.71 18.7511 174.1199 97.3001
MOLF/EiJ m 177.7967 18.7511 216.2065 139.3868
NZW/LacJ m 81.1467 18.7511 119.5565 42.7368
PWD/PhJ m 125.7933 18.7511 164.2032 87.3835
WSB/EiJ m 186.7033 18.7511 225.1132 148.2935




  GWAS USING LINEAR MIXED MODELS