Phenotype measure:   Rusyn5   liver_Acox1_hfe

ID, description, units MPD:43050   liver_Acox1_hfe   liver Acox1, mRNA abundance relative to high-fat-only group   [%]
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   6 strains     sex: m     age: 8-14wks
Procedure RNA expression profiling
Ontology mappings


  STRAIN COMPARISON PLOT
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Rusyn5 - liver Acox1, mRNA abundance relative to high-fat-only group



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested6 strains
Mean of the strain means86.7   %
Median of the strain means79.7   %
SD of the strain means± 22.9
Coefficient of variation (CV)0.264
Min–max range of strain means68.0   –   127   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 5 7905.9502 1581.19 4.916 0.0112
Residuals 12 3859.6803 321.64


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 127.0 28.2   3 16.3 0.222 95.8, 150.0 1.76
C57BL/10J m 69.6 12.9   3 7.42 0.185 57.6, 83.2 -0.75
KK/HlJ m 70.9 16.7   3 9.62 0.235 59.8, 90.0 -0.69
NZW/LacJ m 68.0 10.9   3 6.32 0.161 57.9, 79.6 -0.82
PWD/PhJ m 88.5 23.7   3 13.7 0.267 62.5, 109.0 0.08
WSB/EiJ m 96.4 3.41   3 1.97 0.0353 92.7, 99.3 0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 127.23 10.3544 149.7903 104.6697
C57BL/10J m 69.5867 10.3544 92.1469 47.0264
KK/HlJ m 70.8567 10.3544 93.4169 48.2964
NZW/LacJ m 67.9733 10.3544 90.5336 45.4131
PWD/PhJ m 88.5333 10.3544 111.0936 65.9731
WSB/EiJ m 96.4333 10.3544 118.9936 73.8731




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.