Project measure / variable:   Rusyn5   total_pathology_hf

ID, description, units MPD:43019   total_pathology_hf   total liver histopathology (0-8)   [score]  high-fat only  
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure histopathology
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rusyn5 - total liver histopathology (0-8) high-fat only



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means1.26   score
Median of the strain means1.00   score
SD of the strain means± 0.840
Coefficient of variation (CV)0.665
Min–max range of strain means0.500   –   3.67   score
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 27.4524 2.1117 6.4503 < 0.0001
Residuals 28 9.1667 0.3274


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.5 0.0   3 0.0 0.0 0.5, 0.5 -0.91
AKR/J m 1.0 1.0   3 0.577 1.0 -0.31
BALB/cByJ m 0.833 0.289   3 0.167 0.346 0.5, 1.0 -0.51
BALB/cJ m 1.17 0.764   3 0.441 0.655 0.5, 2.0 -0.11
BTBR T+ Itpr3tf/J m 0.833 0.289   3 0.167 0.346 0.5, 1.0 -0.51
C3H/HeJ m 0.5 0.5   3 0.289 1.0 -0.91
C57BL/10J m 1.17 0.289   3 0.167 0.247 1.0, 1.5 -0.11
DBA/2J m 1.17 0.764   3 0.441 0.655 0.5, 2.0 -0.11
FVB/NJ m 1.0 0.866   3 0.5 0.866 0.5, 2.0 -0.31
KK/HlJ m 3.67 0.764   3 0.441 0.208 3.0, 4.5 2.87
MOLF/EiJ m 2.5 0.0   3 0.0 0.0 2.5, 2.5 1.47
NZW/LacJ m 1.0 0.5   3 0.289 0.5 0.5, 1.5 -0.31
PWD/PhJ m 1.33 0.289   3 0.167 0.217 1.0, 1.5 0.08
WSB/EiJ m 1.0 0.5   3 0.289 0.5 0.5, 1.5 -0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.5 0.3303 1.1767 0.0
AKR/J m 1.0 0.3303 1.6767 0.3233
BALB/cByJ m 0.8333 0.3303 1.51 0.1567
BALB/cJ m 1.1667 0.3303 1.8433 0.49
BTBR T+ Itpr3tf/J m 0.8333 0.3303 1.51 0.1567
C3H/HeJ m 0.5 0.3303 1.1767 0.0
C57BL/10J m 1.1667 0.3303 1.8433 0.49
DBA/2J m 1.1667 0.3303 1.8433 0.49
FVB/NJ m 1.0 0.3303 1.6767 0.3233
KK/HlJ m 3.6667 0.3303 4.3433 2.99
MOLF/EiJ m 2.5 0.3303 3.1767 1.8233
NZW/LacJ m 1.0 0.3303 1.6767 0.3233
PWD/PhJ m 1.3333 0.3303 2.01 0.6567
WSB/EiJ m 1.0 0.3303 1.6767 0.3233




  GWAS USING LINEAR MIXED MODELS