Project measure / variable:   Rusyn5   steatosis_hfe

ID, description, units MPD:43014   steatosis_hfe   liver steatosis (0-4)   [score]  high-fat and ethanol  
high-fat diet and ethanol study
Data set, strains Rusyn5   inbred   14 strains     sex: m     age: 8-14wks
Procedure histopathology
Ontology mappings

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  STRAIN COMPARISON PLOT
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Rusyn5 - liver steatosis (0-4) high-fat and ethanol



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested14 strains
Mean of the strain means1.62   score
Median of the strain means1.42   score
SD of the strain means± 1.18
Coefficient of variation (CV)0.726
Min–max range of strain means0.167   –   4.00   score
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 53.9048 4.1465 38.7009 < 0.0001
Residuals 28 3.0 0.1071


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 2.17 0.577   3 0.333 0.266 1.5, 2.5 0.47
AKR/J m 0.667 0.289   3 0.167 0.433 0.5, 1.0 -0.81
BALB/cByJ m 2.33 0.289   3 0.167 0.124 2.0, 2.5 0.6
BALB/cJ m 1.5 0.5   3 0.289 0.333 1.0, 2.0 -0.1
BTBR T+ Itpr3tf/J m 1.17 0.577   3 0.333 0.495 0.5, 1.5 -0.38
C3H/HeJ m 0.5 0.0   3 0.0 0.0 0.5, 0.5 -0.95
C57BL/10J m 2.67 0.289   3 0.167 0.108 2.5, 3.0 0.89
DBA/2J m 1.5 0.0   3 0.0 0.0 1.5, 1.5 -0.1
FVB/NJ m 1.33 0.289   3 0.167 0.217 1.0, 1.5 -0.25
KK/HlJ m 3.5 0.0   3 0.0 0.0 3.5, 3.5 1.6
MOLF/EiJ m 0.333 0.289   3 0.167 0.866 -1.09
NZW/LacJ m 4.0 0.0   3 0.0 0.0 4.0, 4.0 2.02
PWD/PhJ m 0.167 0.289   3 0.167 1.73 -1.24
WSB/EiJ m 0.833 0.289   3 0.167 0.346 0.5, 1.0 -0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 2.1667 0.189 2.5538 1.7796
AKR/J m 0.6667 0.189 1.0538 0.2796
BALB/cByJ m 2.3333 0.189 2.7204 1.9462
BALB/cJ m 1.5 0.189 1.8871 1.1129
BTBR T+ Itpr3tf/J m 1.1667 0.189 1.5538 0.7796
C3H/HeJ m 0.5 0.189 0.8871 0.1129
C57BL/10J m 2.6667 0.189 3.0538 2.2796
DBA/2J m 1.5 0.189 1.8871 1.1129
FVB/NJ m 1.3333 0.189 1.7204 0.9462
KK/HlJ m 3.5 0.189 3.8871 3.1129
MOLF/EiJ m 0.3333 0.189 0.7204 0.0
NZW/LacJ m 4.0 0.189 4.3871 3.6129
PWD/PhJ m 0.1667 0.189 0.5538 0.0
WSB/EiJ m 0.8333 0.189 1.2204 0.4462




  GWAS USING LINEAR MIXED MODELS