Project measure / variable:   Donahue9   magnesium

ID, description, units MPD:41804   magnesium   magnesium (serum Mg)   [mg/dL]  
Data set, strains Donahue9   B6.PWD consomic w/par   25 strains     sex: both     age: 11wks
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  STRAIN COMPARISON PLOT
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Donahue9 - magnesium (serum Mg)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains25 strains
Mean of the strain means2.98   mg/dL 2.95   mg/dL
Median of the strain means2.97   mg/dL 2.91   mg/dL
SD of the strain means± 0.242 ± 0.324
Coefficient of variation (CV)0.0811 0.110
Min–max range of strain means2.48   –   3.66   mg/dL 2.43   –   3.65   mg/dL
Mean sample size per strain8.3   mice 8.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0698 0.0698 0.4977 0.481
strain 22 25.8822 1.1765 8.3916 < 0.0001
sex:strain 22 4.7496 0.2159 1.5399 0.0589
Residuals 330 46.2648 0.1402


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.PWD-Chr1 f 2.8 0.307   8 0.109 0.11 2.2, 3.2 -0.75
B6.PWD-Chr1 m 2.77 0.459   8 0.162 0.165 2.3, 3.4 -0.56
B6.PWD-Chr10.1 f 2.91 0.27   8 0.0953 0.0926 2.5, 3.3 -0.3
B6.PWD-Chr10.1 m 3.15 0.177   8 0.0627 0.0563 2.9, 3.5 0.61
B6.PWD-Chr10.2 f 2.97 0.119   11 0.0359 0.0401 2.7, 3.1 -0.05
B6.PWD-Chr10.2 m 2.96 0.0699   10 0.0221 0.0236 2.9, 3.1 0.02
B6.PWD-Chr10.3 f 3.01 0.164   8 0.0581 0.0545 2.7, 3.2 0.12
B6.PWD-Chr10.3 m 3.12 0.116   8 0.0412 0.0373 2.9, 3.3 0.52
B6.PWD-Chr11.1 f 3.18 0.142   12 0.0411 0.0448 2.9, 3.4 0.82
B6.PWD-Chr11.1 m 3.2 0.307   12 0.0888 0.0961 2.9, 3.9 0.77
B6.PWD-Chr11.2 f 2.87 0.452   10 0.143 0.158 1.8, 3.5 -0.46
B6.PWD-Chr11.2 m 2.86 0.334   10 0.106 0.117 2.4, 3.4 -0.28
B6.PWD-Chr11.3 f 3.66 0.259   10 0.0819 0.0708 3.1, 4.0 2.8
B6.PWD-Chr11.3 m 3.65 0.227   8 0.0802 0.0621 3.3, 3.9 2.16
B6.PWD-Chr12 f 3.05 0.763   8 0.27 0.25 2.0, 4.0 0.28
B6.PWD-Chr12 m 3.05 0.551   4 0.275 0.181 2.4, 3.6 0.3
B6.PWD-Chr14 f 3.14 0.35   9 0.117 0.111 2.7, 3.6 0.65
B6.PWD-Chr14 m 3.17 0.312   9 0.104 0.0986 2.5, 3.6 0.67
B6.PWD-Chr15 f 2.62 0.238   8 0.084 0.0905 2.1, 2.9 -1.5
B6.PWD-Chr15 m 2.66 0.13   8 0.046 0.0489 2.5, 2.8 -0.9
B6.PWD-Chr16 f 3.0 0.245   10 0.0775 0.0816 2.5, 3.4 0.07
B6.PWD-Chr16 m 2.82 0.786   6 0.321 0.279 2.0, 3.7 -0.41
B6.PWD-Chr17 f 2.92 0.139   8 0.0491 0.0475 2.8, 3.2 -0.26
B6.PWD-Chr17 m 2.67 0.276   8 0.0977 0.103 2.4, 3.1 -0.87
B6.PWD-Chr18 f 2.71 0.155   8 0.0549 0.0572 2.5, 3.0 -1.13
B6.PWD-Chr18 m 2.69 0.203   8 0.0718 0.0756 2.4, 3.0 -0.81
B6.PWD-Chr19 f 2.83 0.149   8 0.0526 0.0527 2.6, 3.1 -0.63
B6.PWD-Chr19 m 2.75 0.293   8 0.104 0.106 2.4, 3.2 -0.62
B6.PWD-Chr3 m 2.74 0.235   9 0.0784 0.0857 2.3, 3.0 -0.65
B6.PWD-Chr5 f 2.9 0.321   8 0.113 0.111 2.4, 3.3 -0.34
B6.PWD-Chr5 m 3.05 0.417   8 0.148 0.137 2.5, 3.7 0.3
B6.PWD-Chr6 f 3.12 0.243   8 0.0861 0.0779 2.8, 3.5 0.57
B6.PWD-Chr6 m 3.43 0.219   8 0.0773 0.0639 3.2, 3.8 1.48
B6.PWD-Chr9 f 3.05 0.526   4 0.263 0.172 2.6, 3.8 0.28
B6.PWD-Chr9 m 2.91 0.291   7 0.11 0.0999 2.5, 3.3 -0.13
B6.PWD-ChrX.1 f 2.9 0.587   5 0.263 0.203 2.2, 3.5 -0.34
B6.PWD-ChrX.1 m 2.43 0.509   6 0.208 0.209 1.8, 3.1 -1.61
B6.PWD-ChrX.2 m 3.08 0.67   9 0.223 0.218 2.0, 4.3 0.4
B6.PWD-ChrX.3 f 2.99 0.651   8 0.23 0.218 2.1, 3.9 0.03
B6.PWD-ChrX.3 m 2.62 0.427   8 0.151 0.163 2.1, 3.4 -1.03
B6.PWD-ChrY f 3.18 0.58   8 0.205 0.183 2.3, 3.9 0.82
B6.PWD-ChrY m 2.52 0.568   8 0.201 0.225 1.8, 3.3 -1.33
B6.PWD-mt f 2.94 0.555   8 0.196 0.189 2.2, 3.9 -0.17
B6.PWD-mt m 3.25 0.952   8 0.336 0.293 2.0, 4.5 0.92
C57BL/6J f 3.36 0.233   8 0.0822 0.0692 3.0, 3.7 1.56
C57BL/6J m 3.62 0.225   8 0.0796 0.0621 3.3, 4.0 2.06
PWD/PhJ f 2.48 0.198   8 0.0701 0.0801 2.2, 2.8 -2.08
PWD/PhJ m 2.63 0.05   9 0.0167 0.019 2.6, 2.7 -0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 f 2.8 0.1324 3.0604 2.5396
B6.PWD-Chr1 m 2.775 0.1324 3.0354 2.5146
B6.PWD-Chr10.1 f 2.9125 0.1324 3.1729 2.6521
B6.PWD-Chr10.1 m 3.15 0.1324 3.4104 2.8896
B6.PWD-Chr10.2 f 2.9727 0.1129 3.1948 2.7506
B6.PWD-Chr10.2 m 2.96 0.1184 3.1929 2.7271
B6.PWD-Chr10.3 f 3.0125 0.1324 3.2729 2.7521
B6.PWD-Chr10.3 m 3.125 0.1324 3.3854 2.8646
B6.PWD-Chr11.1 f 3.175 0.1081 3.3876 2.9624
B6.PWD-Chr11.1 m 3.2 0.1081 3.4126 2.9874
B6.PWD-Chr11.2 f 2.87 0.1184 3.1029 2.6371
B6.PWD-Chr11.2 m 2.86 0.1184 3.0929 2.6271
B6.PWD-Chr11.3 f 3.66 0.1184 3.8929 3.4271
B6.PWD-Chr11.3 m 3.65 0.1324 3.9104 3.3896
B6.PWD-Chr12 f 3.05 0.1324 3.3104 2.7896
B6.PWD-Chr12 m 3.05 0.1872 3.4183 2.6817
B6.PWD-Chr14 f 3.1444 0.1248 3.39 2.8989
B6.PWD-Chr14 m 3.1667 0.1248 3.4122 2.9211
B6.PWD-Chr15 f 2.625 0.1324 2.8854 2.3646
B6.PWD-Chr15 m 2.6625 0.1324 2.9229 2.4021
B6.PWD-Chr16 f 3.0 0.1184 3.2329 2.7671
B6.PWD-Chr16 m 2.8167 0.1529 3.1174 2.516
B6.PWD-Chr17 f 2.925 0.1324 3.1854 2.6646
B6.PWD-Chr17 m 2.675 0.1324 2.9354 2.4146
B6.PWD-Chr18 f 2.7125 0.1324 2.9729 2.4521
B6.PWD-Chr18 m 2.6875 0.1324 2.9479 2.4271
B6.PWD-Chr19 f 2.825 0.1324 3.0854 2.5646
B6.PWD-Chr19 m 2.75 0.1324 3.0104 2.4896
B6.PWD-Chr5 f 2.9 0.1324 3.1604 2.6396
B6.PWD-Chr5 m 3.05 0.1324 3.3104 2.7896
B6.PWD-Chr6 f 3.125 0.1324 3.3854 2.8646
B6.PWD-Chr6 m 3.425 0.1324 3.6854 3.1646
B6.PWD-Chr9 f 3.05 0.1872 3.4183 2.6817
B6.PWD-Chr9 m 2.9143 0.1415 3.1927 2.6359
B6.PWD-ChrX.1 f 2.9 0.1674 3.2294 2.5706
B6.PWD-ChrX.1 m 2.4333 0.1529 2.734 2.1326
B6.PWD-ChrX.3 f 2.9875 0.1324 3.2479 2.7271
B6.PWD-ChrX.3 m 2.625 0.1324 2.8854 2.3646
B6.PWD-ChrY f 3.175 0.1324 3.4354 2.9146
B6.PWD-ChrY m 2.525 0.1324 2.7854 2.2646
B6.PWD-mt f 2.9375 0.1324 3.1979 2.6771
B6.PWD-mt m 3.25 0.1324 3.5104 2.9896
C57BL/6J f 3.3625 0.1324 3.6229 3.1021
C57BL/6J m 3.625 0.1324 3.8854 3.3646
PWD/PhJ f 2.475 0.1324 2.7354 2.2146
PWD/PhJ m 2.6333 0.1248 2.8789 2.3878


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.PWD-Chr1 both 2.7875 0.0936 2.9716 2.6034
B6.PWD-Chr10.1 both 3.0313 0.0936 3.2154 2.8471
B6.PWD-Chr10.2 both 2.9664 0.0818 3.1273 2.8054
B6.PWD-Chr10.3 both 3.0688 0.0936 3.2529 2.8846
B6.PWD-Chr11.1 both 3.1875 0.0764 3.3379 3.0371
B6.PWD-Chr11.2 both 2.865 0.0837 3.0297 2.7003
B6.PWD-Chr11.3 both 3.655 0.0888 3.8297 3.4803
B6.PWD-Chr12 both 3.05 0.1146 3.2755 2.8245
B6.PWD-Chr14 both 3.1556 0.0883 3.3292 2.9819
B6.PWD-Chr15 both 2.6438 0.0936 2.8279 2.4596
B6.PWD-Chr16 both 2.9083 0.0967 3.0985 2.7182
B6.PWD-Chr17 both 2.8 0.0936 2.9841 2.6159
B6.PWD-Chr18 both 2.7 0.0936 2.8841 2.5159
B6.PWD-Chr19 both 2.7875 0.0936 2.9716 2.6034
B6.PWD-Chr5 both 2.975 0.0936 3.1591 2.7909
B6.PWD-Chr6 both 3.275 0.0936 3.4591 3.0909
B6.PWD-Chr9 both 2.9821 0.1173 3.213 2.7513
B6.PWD-ChrX.1 both 2.6667 0.1134 2.8897 2.4437
B6.PWD-ChrX.3 both 2.8062 0.0936 2.9904 2.6221
B6.PWD-ChrY both 2.85 0.0936 3.0341 2.6659
B6.PWD-mt both 3.0938 0.0936 3.2779 2.9096
C57BL/6J both 3.4938 0.0936 3.6779 3.3096
PWD/PhJ both 2.5542 0.091 2.7331 2.3752




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA