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Project measure / variable:   Crowley1   pct_center_d120

ID, description, units MPD:39428   pct_center_d120   center occupancy, percentage of total time   [%]  on day 120  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   26 strains     sex: m     age: 9-28wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crowley1 - center occupancy, percentage of total time on day 120



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested26 strains
Mean of the strain means5.34   %
Median of the strain means3.42   %
SD of the strain means± 5.27
Coefficient of variation (CV)0.986
Min–max range of strain means0.0940   –   16.8   %
Mean sample size per strain5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 25 3832.2337 153.2893 6.5995 < 0.0001
Residuals 122 2833.7658 23.2276


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.212 0.436   8 0.154 2.05 -0.97
A/J m 0.242 0.477   5 0.213 1.97 -0.97
AKR/J m 4.96 5.36   5 2.4 1.08 0.61, 13.5 -0.07
BALB/cByJ m 0.958 1.84   4 0.918 1.92 -0.83
BTBR T+ Itpr3tf/J m 0.557 0.388   8 0.137 0.695 0.05, 1.2 -0.91
C3H/HeJ m 2.36 1.26   4 0.629 0.532 1.26, 3.91 -0.57
C57BL/6J m 10.7 6.49   5 2.9 0.606 1.67, 19.2 1.02
C57BLKS/J m 0.874 0.875   5 0.391 1.0 0.07, 2.21 -0.85
CAST/EiJ m 6.13 2.25   5 1.01 0.367 3.62, 9.14 0.15
CBA/J m 16.8 17.1   5 7.65 1.02 6.43, 47.1 2.18
DBA/2J m 5.56 5.17   9 1.72 0.931 0.46, 18.5 0.04
DDY/JclSidSeyFrkJ m 2.1 1.71   7 0.648 0.815 0.18, 4.39 -0.62
FVB/NJ m 13.5 4.95   5 2.21 0.366 8.19, 20.3 1.55
KK/HlJ m 4.09 4.21   7 1.59 1.03 0.55, 10.5 -0.24
MA/MyJ m 7.27 5.3   6 2.16 0.729 0.98, 15.7 0.37
MOLF/EiJ m 1.26 0.752   5 0.336 0.598 -0.77
MRL/MpJ m 2.75 1.79   5 0.799 0.65 0.89, 5.36 -0.49
MSM/MsJ m 7.28 5.79   5 2.59 0.796 0.06, 14.0 0.37
NOD/ShiLtJ m 16.1 7.48   5 3.34 0.463 9.38, 28.7 2.04
NON/ShiLtJ m 5.63 4.45   7 1.68 0.791 0.37, 12.9 0.06
NZL/LtJ m 1.79 1.22   7 0.461 0.681 0.45, 3.93 -0.67
NZO/HlLtJ m 0.625 0.556   4 0.278 0.89 0.07, 1.35 -0.9
NZW/LacJ m 0.094 0.115   5 0.0513 1.22 -1.0
PWK/PhJ m 1.9 0.874   5 0.391 0.46 0.38, 2.56 -0.65
SJL/J m 10.9 7.91   4 3.95 0.726 3.16, 21.4 1.06
SM/J m 14.2 3.17   8 1.12 0.223 8.07, 19.0 1.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.2125 1.704 3.5856 0.0
A/J m 0.242 2.1553 4.5087 0.0
AKR/J m 4.96 2.1553 9.2267 0.6933
BALB/cByJ m 0.9575 2.4098 5.7278 0.0
BTBR T+ Itpr3tf/J m 0.5575 1.704 3.9306 0.0
C3H/HeJ m 2.3625 2.4098 7.1328 0.0
C57BL/6J m 10.71 2.1553 14.9767 6.4433
C57BLKS/J m 0.874 2.1553 5.1407 0.0
CAST/EiJ m 6.126 2.1553 10.3927 1.8593
CBA/J m 16.842 2.1553 21.1087 12.5753
DBA/2J m 5.56 1.6065 8.7402 2.3798
DDY/JclSidSeyFrkJ m 2.1029 1.8216 5.7089 0.0
FVB/NJ m 13.532 2.1553 17.7987 9.2653
KK/HlJ m 4.0857 1.8216 7.6918 0.4797
MA/MyJ m 7.2717 1.9676 11.1666 3.3767
MOLF/EiJ m 1.258 2.1553 5.5247 0.0
MRL/MpJ m 2.75 2.1553 7.0167 0.0
MSM/MsJ m 7.28 2.1553 11.5467 3.0133
NOD/ShiLtJ m 16.136 2.1553 20.4027 11.8693
NON/ShiLtJ m 5.6271 1.8216 9.2332 2.0211
NZL/LtJ m 1.7886 1.8216 5.3946 0.0
NZO/HlLtJ m 0.625 2.4098 5.3953 0.0
NZW/LacJ m 0.094 2.1553 4.3607 0.0
PWK/PhJ m 1.902 2.1553 6.1687 0.0
SJL/J m 10.8875 2.4098 15.6578 6.1172
SM/J m 14.2087 1.704 17.5819 10.8356




  GWAS USING LINEAR MIXED MODELS