Project measure / variable:   Crowley1   pct_center_d60

ID, description, units MPD:39427   pct_center_d60   center occupancy, percentage of total time   [%]  on day 60  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crowley1 - center occupancy, percentage of total time on day 60



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means4.64   %
Median of the strain means2.07   %
SD of the strain means± 5.42
Coefficient of variation (CV)1.17
Min–max range of strain means0.150   –   18.8   %
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 4234.7013 162.8731 6.5097 < 0.0001
Residuals 131 3277.6112 25.0199


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.225 0.381   8 0.135 1.69 -0.81
A/J m 0.15 0.302   5 0.135 2.02 -0.83
AKR/J m 1.84 1.74   5 0.78 0.945 0.64, 4.93 -0.52
BALB/cByJ m 1.09 1.27   4 0.635 1.17 0.02, 2.55 -0.66
BTBR T+ Itpr3tf/J m 0.233 0.253   8 0.0894 1.09 -0.81
C3H/HeJ m 0.902 0.741   5 0.332 0.822 0.07, 1.94 -0.69
C57BL/6J m 3.41 4.14   5 1.85 1.21 1.16, 10.8 -0.23
C57BLKS/J m 1.06 1.48   5 0.663 1.39 0.09, 3.66 -0.66
CAST/EiJ m 8.35 1.09   5 0.487 0.13 7.4, 10.1 0.68
CBA/J m 16.7 15.4   5 6.88 0.922 7.15, 43.8 2.22
DBA/2J m 2.5 2.07   9 0.689 0.826 0.31, 5.88 -0.39
DDY/JclSidSeyFrkJ m 2.07 1.81   7 0.685 0.875 0.12, 4.21 -0.47
FVB/NJ m 9.27 5.72   5 2.56 0.617 0.85
KK/HlJ m 1.54 0.879   7 0.332 0.569 0.16, 2.88 -0.57
MA/MyJ m 5.95 2.43   6 0.99 0.408 2.83, 9.61 0.24
MOLF/EiJ m 4.77 4.62   5 2.07 0.968 0.48, 11.2 0.02
MRL/MpJ m 0.858 0.721   5 0.322 0.84 0.11, 1.75 -0.7
MSM/MsJ m 2.84 4.15   6 1.7 1.46 0.05, 10.2 -0.33
NOD/ShiLtJ m 14.3 8.84   5 3.95 0.619 3.58, 28.2 1.78
NON/ShiLtJ m 4.16 3.05   8 1.08 0.734 0.79, 8.93 -0.09
NZL/LtJ m 1.58 1.2   8 0.424 0.756 0.25, 3.66 -0.56
NZO/HlLtJ m 0.84 0.667   4 0.333 0.794 0.27, 1.79 -0.7
NZW/LacJ m 0.172 0.162   5 0.0725 0.942 -0.82
PWK/PhJ m 1.13 0.894   5 0.4 0.793 0.37, 2.41 -0.65
SJL/J m 6.99 3.48   5 1.56 0.498 2.41, 12.2 0.43
SM/J m 13.6 2.71   8 0.956 0.199 9.8, 17.4 1.65
WSB/EiJ m 18.8 18.3   5 8.19 0.972 6.29, 51.2 2.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.225 1.7685 3.7235 0.0
A/J m 0.15 2.237 4.5752 0.0
AKR/J m 1.844 2.237 6.2692 0.0
BALB/cByJ m 1.0875 2.501 6.0351 0.0
BTBR T+ Itpr3tf/J m 0.2325 1.7685 3.731 0.0
C3H/HeJ m 0.902 2.237 5.3272 0.0
C57BL/6J m 3.412 2.237 7.8372 0.0
C57BLKS/J m 1.064 2.237 5.4892 0.0
CAST/EiJ m 8.352 2.237 12.7772 3.9268
CBA/J m 16.7 2.237 21.1252 12.2748
DBA/2J m 2.5022 1.6673 5.8006 0.0
DDY/JclSidSeyFrkJ m 2.0729 1.8906 5.8129 0.0
FVB/NJ m 9.268 2.237 13.6932 4.8428
KK/HlJ m 1.5443 1.8906 5.2843 0.0
MA/MyJ m 5.9483 2.0421 9.988 1.9087
MOLF/EiJ m 4.772 2.237 9.1972 0.3468
MRL/MpJ m 0.858 2.237 5.2832 0.0
MSM/MsJ m 2.8417 2.0421 6.8813 0.0
NOD/ShiLtJ m 14.276 2.237 18.7012 9.8508
NON/ShiLtJ m 4.1563 1.7685 7.6547 0.6578
NZL/LtJ m 1.585 1.7685 5.0835 0.0
NZO/HlLtJ m 0.84 2.501 5.7876 0.0
NZW/LacJ m 0.172 2.237 4.5972 0.0
PWK/PhJ m 1.128 2.237 5.5532 0.0
SJL/J m 6.994 2.237 11.4192 2.5688
SM/J m 13.5875 1.7685 17.086 10.089
WSB/EiJ m 18.838 2.237 23.2632 14.4128




  GWAS USING LINEAR MIXED MODELS