Project measure / variable:   Crowley1   pct_center_d30

ID, description, units MPD:39426   pct_center_d30   center occupancy, percentage of total time   [%]  on day 30  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crowley1 - center occupancy, percentage of total time on day 30



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means5.78   %
Median of the strain means4.41   %
SD of the strain means± 5.28
Coefficient of variation (CV)0.914
Min–max range of strain means0.140   –   19.3   %
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 3874.6623 149.0255 5.9194 < 0.0001
Residuals 132 3323.2266 25.176


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.2 3.26   8 1.15 2.71 -0.87
A/J m 0.14 0.286   5 0.128 2.04 -1.07
AKR/J m 4.29 3.54   5 1.58 0.825 1.29, 10.4 -0.28
BALB/cByJ m 1.07 1.45   5 0.648 1.35 -0.89
BTBR T+ Itpr3tf/J m 0.9 0.638   8 0.226 0.709 0.14, 1.74 -0.92
C3H/HeJ m 0.952 1.07   5 0.478 1.12 0.18, 2.65 -0.91
C57BL/6J m 3.9 3.19   5 1.43 0.817 1.46, 9.15 -0.36
C57BLKS/J m 2.03 3.16   5 1.41 1.55 0.11, 7.61 -0.71
CAST/EiJ m 9.82 2.52   5 1.13 0.257 6.71, 12.2 0.77
CBA/J m 19.3 13.4   5 5.98 0.692 8.67, 40.2 2.56
DBA/2J m 6.62 4.64   9 1.55 0.7 0.74, 12.6 0.16
DDY/JclSidSeyFrkJ m 4.65 3.91   7 1.48 0.842 0.12, 9.32 -0.21
FVB/NJ m 9.75 2.79   5 1.25 0.287 6.76, 13.5 0.75
KK/HlJ m 3.07 1.66   7 0.626 0.539 0.62, 5.58 -0.51
MA/MyJ m 9.03 7.94   6 3.24 0.879 2.79, 24.8 0.62
MOLF/EiJ m 4.58 4.74   5 2.12 1.04 0.22, 11.8 -0.23
MRL/MpJ m 4.53 5.11   5 2.28 1.13 1.26, 13.4 -0.24
MSM/MsJ m 2.53 3.88   6 1.58 1.53 -0.62
NOD/ShiLtJ m 15.5 5.34   5 2.39 0.344 9.65, 23.5 1.84
NON/ShiLtJ m 4.41 2.53   8 0.893 0.573 1.81, 8.27 -0.26
NZL/LtJ m 7.03 5.24   8 1.85 0.745 0.57, 14.9 0.24
NZO/HlLtJ m 1.12 0.798   4 0.399 0.713 0.34, 2.15 -0.88
NZW/LacJ m 0.76 0.92   5 0.411 1.21 0.1, 2.38 -0.95
PWK/PhJ m 0.948 0.155   5 0.0695 0.164 0.81, 1.2 -0.91
SJL/J m 9.9 12.6   5 5.64 1.27 1.05, 32.1 0.78
SM/J m 11.3 2.07   8 0.733 0.184 8.73, 14.4 1.05
WSB/EiJ m 16.7 10.5   5 4.71 0.631 6.4, 30.5 2.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.2025 1.774 4.7116 0.0
A/J m 0.14 2.2439 4.5787 0.0
AKR/J m 4.29 2.2439 8.7287 0.0
BALB/cByJ m 1.074 2.2439 5.5127 0.0
BTBR T+ Itpr3tf/J m 0.9 1.774 4.4091 0.0
C3H/HeJ m 0.952 2.2439 5.3907 0.0
C57BL/6J m 3.904 2.2439 8.3427 0.0
C57BLKS/J m 2.034 2.2439 6.4727 0.0
CAST/EiJ m 9.824 2.2439 14.2627 5.3853
CBA/J m 19.298 2.2439 23.7367 14.8593
DBA/2J m 6.6222 1.6725 9.9306 3.3138
DDY/JclSidSeyFrkJ m 4.6457 1.8965 8.3971 0.8943
FVB/NJ m 9.746 2.2439 14.1847 5.3073
KK/HlJ m 3.0743 1.8965 6.8257 0.0
MA/MyJ m 9.0333 2.0484 13.0853 4.9814
MOLF/EiJ m 4.584 2.2439 9.0227 0.1453
MRL/MpJ m 4.534 2.2439 8.9727 0.0953
MSM/MsJ m 2.53 2.0484 6.582 0.0
NOD/ShiLtJ m 15.49 2.2439 19.9287 11.0513
NON/ShiLtJ m 4.4062 1.774 7.9154 0.8971
NZL/LtJ m 7.0325 1.774 10.5416 3.5234
NZO/HlLtJ m 1.12 2.5088 6.0826 0.0
NZW/LacJ m 0.76 2.2439 5.1987 0.0
PWK/PhJ m 0.948 2.2439 5.3867 0.0
SJL/J m 9.896 2.2439 14.3347 5.4573
SM/J m 11.2587 1.774 14.7679 7.7496
WSB/EiJ m 16.7 2.2439 21.1387 12.2613




  GWAS USING LINEAR MIXED MODELS