Project measure / variable:   Crowley1   vertical_actd30

ID, description, units MPD:39418   vertical_actd30   vertical activity, beam breaks, 60 min test   [n]  on day 30  
haloperidol study
Data set, strains Crowley1   inbred w/CC8   27 strains     sex: m     age: 9-28wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crowley1 - vertical activity, beam breaks, 60 min test on day 30



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested27 strains
Mean of the strain means234   n
Median of the strain means117   n
SD of the strain means± 248
Coefficient of variation (CV)1.06
Min–max range of strain means1.38   –   1163   n
Mean sample size per strain5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 26 8846493.4109 340249.7466 16.1631 < 0.0001
Residuals 132 2778731.3187 21050.9948


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.38 1.77   8 0.625 1.29 -0.94
A/J m 26.2 16.4   5 7.34 0.627 5.0, 49.0 -0.84
AKR/J m 92.6 57.8   5 25.9 0.625 40.0, 186.0 -0.57
BALB/cByJ m 74.2 47.1   5 21.0 0.634 12.0, 123.0 -0.64
BTBR T+ Itpr3tf/J m 42.0 27.0   8 9.54 0.642 9.0, 83.0 -0.77
C3H/HeJ m 50.4 41.4   5 18.5 0.822 6.0, 104.0 -0.74
C57BL/6J m 240.0 148.0   5 66.3 0.617 142.0, 502.0 0.02
C57BLKS/J m 105.0 60.1   5 26.9 0.574 38.0, 185.0 -0.52
CAST/EiJ m 551.0 297.0   5 133.0 0.538 323.0, 1063.0 1.28
CBA/J m 351.0 121.0   5 54.0 0.344 233.0, 546.0 0.47
DBA/2J m 375.0 86.5   9 28.8 0.231 250.0, 550.0 0.57
DDY/JclSidSeyFrkJ m 69.6 30.7   7 11.6 0.441 13.0, 105.0 -0.66
FVB/NJ m 1163.0 341.0   5 153.0 0.293 772.0, 1604.0 3.74
KK/HlJ m 73.1 44.2   7 16.7 0.604 11.0, 112.0 -0.65
MA/MyJ m 404.0 181.0   6 73.7 0.447 221.0, 684.0 0.68
MOLF/EiJ m 105.0 54.6   5 24.4 0.521 36.0, 167.0 -0.52
MRL/MpJ m 259.0 120.0   5 53.9 0.466 139.0, 400.0 0.1
MSM/MsJ m 95.7 132.0   6 53.8 1.38 -0.56
NOD/ShiLtJ m 469.0 145.0   5 64.8 0.309 246.0, 624.0 0.95
NON/ShiLtJ m 427.0 356.0   8 126.0 0.834 87.0, 1128.0 0.78
NZL/LtJ m 77.1 31.6   8 11.2 0.41 40.0, 123.0 -0.63
NZO/HlLtJ m 43.5 26.0   4 13.0 0.599 17.0, 79.0 -0.77
NZW/LacJ m 124.0 50.2   5 22.4 0.405 75.0, 208.0 -0.44
PWK/PhJ m 117.0 56.3   5 25.2 0.481 45.0, 202.0 -0.47
SJL/J m 161.0 78.9   5 35.3 0.49 96.0, 255.0 -0.29
SM/J m 479.0 204.0   8 72.1 0.426 225.0, 803.0 0.99
WSB/EiJ m 345.0 111.0   5 49.8 0.323 160.0, 446.0 0.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.375 51.2969 102.8454 0.0
A/J m 26.2 64.886 154.551 0.0
AKR/J m 92.6 64.886 220.951 0.0
BALB/cByJ m 74.2 64.886 202.551 0.0
BTBR T+ Itpr3tf/J m 42.0 51.2969 143.4704 0.0
C3H/HeJ m 50.4 64.886 178.751 0.0
C57BL/6J m 240.4 64.886 368.751 112.049
C57BLKS/J m 104.6 64.886 232.951 0.0
CAST/EiJ m 550.8 64.886 679.151 422.449
CBA/J m 351.4 64.886 479.751 223.049
DBA/2J m 375.1111 48.3632 470.7783 279.4439
DDY/JclSidSeyFrkJ m 69.5714 54.8387 178.0478 0.0
FVB/NJ m 1163.0 64.886 1291.351 1034.649
KK/HlJ m 73.1429 54.8387 181.6193 0.0
MA/MyJ m 403.5 59.2326 520.6679 286.3321
MOLF/EiJ m 104.8 64.886 233.151 0.0
MRL/MpJ m 258.6 64.886 386.951 130.249
MSM/MsJ m 95.6667 59.2326 212.8346 0.0
NOD/ShiLtJ m 469.0 64.886 597.351 340.649
NON/ShiLtJ m 427.125 51.2969 528.5954 325.6546
NZL/LtJ m 77.125 51.2969 178.5954 0.0
NZO/HlLtJ m 43.5 72.5448 187.0008 0.0
NZW/LacJ m 124.0 64.886 252.351 0.0
PWK/PhJ m 117.0 64.886 245.351 0.0
SJL/J m 161.0 64.886 289.351 32.649
SM/J m 479.0 51.2969 580.4704 377.5296
WSB/EiJ m 345.0 64.886 473.351 216.649




  GWAS USING LINEAR MIXED MODELS