Project measure / variable:   Gupta2   adj_area_kidneyL

ID, description, units MPD:39212   adj_area_kidneyL   normalized kidney planar surface area   [mm2/g]  left  
Data set, strains Gupta2   BXH   10 strains     sex: both     age: postnatal d1
Procedure organ dimensions
Ontology mappings

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  STRAIN COMPARISON PLOT
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Gupta2 - normalized kidney planar surface area left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means3.46   mm2/g 3.41   mm2/g
Median of the strain means3.47   mm2/g 3.41   mm2/g
SD of the strain means± 0.236 ± 0.292
Coefficient of variation (CV)0.0682 0.0855
Min–max range of strain means3.03   –   3.88   mm2/g 3.04   –   4.05   mm2/g
Mean sample size per strain12.9   mice 14.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1675 0.1675 1.0679 0.3024
strain 9 16.1418 1.7935 11.4363 < 0.0001
sex:strain 9 0.8571 0.0952 0.6072 0.7905
Residuals 254 39.8345 0.1568


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXH10/TyJ f 3.88 0.502   13 0.139 0.129 2.88, 4.62 1.79
BXH10/TyJ m 4.05 0.278   14 0.0744 0.0687 3.53, 4.7 2.19
BXH11/TyJ f 3.59 0.458   7 0.173 0.128 2.8, 4.18 0.56
BXH11/TyJ m 3.54 0.274   6 0.112 0.0772 3.13, 3.84 0.44
BXH14/TyJ f 3.48 0.271   15 0.0699 0.0778 3.06, 3.97 0.1
BXH14/TyJ m 3.52 0.29   16 0.0724 0.0822 2.96, 3.9 0.37
BXH19/TyJ f 3.26 0.455   23 0.0949 0.14 2.5, 4.08 -0.84
BXH19/TyJ m 3.04 0.439   11 0.132 0.145 2.21, 3.71 -1.27
BXH2/TyJ f 3.39 0.227   8 0.0802 0.0669 3.12, 3.77 -0.28
BXH2/TyJ m 3.35 0.229   12 0.0662 0.0685 3.04, 3.8 -0.21
BXH4/TyJ f 3.46 0.465   15 0.12 0.134 2.8, 4.31 0.01
BXH4/TyJ m 3.29 0.384   11 0.116 0.117 2.74, 3.95 -0.42
BXH6/TyJ f 3.55 0.399   15 0.103 0.112 2.86, 4.13 0.39
BXH6/TyJ m 3.46 0.679   15 0.175 0.196 2.1, 4.95 0.16
BXH7/TyJ f 3.03 0.349   9 0.116 0.115 2.56, 3.61 -1.81
BXH7/TyJ m 3.12 0.341   16 0.0852 0.109 2.43, 3.73 -1.0
BXH8/TyJ f 3.28 0.329   10 0.104 0.1 2.94, 3.98 -0.75
BXH8/TyJ m 3.17 0.433   19 0.0993 0.136 2.71, 3.99 -0.83
BXH9/TyJ f 3.65 0.332   18 0.0782 0.0909 3.16, 4.43 0.82
BXH9/TyJ m 3.58 0.343   21 0.0748 0.0957 2.9, 4.19 0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ f 3.8777 0.1098 4.094 3.6614
BXH10/TyJ m 4.0514 0.1058 4.2599 3.843
BXH11/TyJ f 3.5886 0.1497 3.8833 3.2938
BXH11/TyJ m 3.5417 0.1617 3.8601 3.2233
BXH14/TyJ f 3.4807 0.1023 3.682 3.2793
BXH14/TyJ m 3.5231 0.099 3.7181 3.3282
BXH19/TyJ f 3.257 0.0826 3.4196 3.0943
BXH19/TyJ m 3.0382 0.1194 3.2733 2.803
BXH2/TyJ f 3.3888 0.14 3.6645 3.113
BXH2/TyJ m 3.3483 0.1143 3.5735 3.1232
BXH4/TyJ f 3.4607 0.1023 3.662 3.2593
BXH4/TyJ m 3.2882 0.1194 3.5233 3.053
BXH6/TyJ f 3.552 0.1023 3.7534 3.3506
BXH6/TyJ m 3.4647 0.1023 3.666 3.2633
BXH7/TyJ f 3.0311 0.132 3.2911 2.7711
BXH7/TyJ m 3.1194 0.099 3.3143 2.9244
BXH8/TyJ f 3.282 0.1252 3.5286 3.0354
BXH8/TyJ m 3.1737 0.0909 3.3526 2.9948
BXH9/TyJ f 3.6506 0.0933 3.8344 3.4667
BXH9/TyJ m 3.5814 0.0864 3.7516 3.4112


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ both 3.9646 0.0763 4.1148 3.8144
BXH11/TyJ both 3.5651 0.1102 3.7821 3.3482
BXH14/TyJ both 3.5019 0.0712 3.642 3.3617
BXH19/TyJ both 3.1476 0.0726 3.2905 3.0046
BXH2/TyJ both 3.3685 0.0904 3.5465 3.1906
BXH4/TyJ both 3.3744 0.0786 3.5292 3.2196
BXH6/TyJ both 3.5083 0.0723 3.6507 3.3659
BXH7/TyJ both 3.0752 0.0825 3.2377 2.9128
BXH8/TyJ both 3.2278 0.0774 3.3802 3.0755
BXH9/TyJ both 3.616 0.0636 3.7412 3.4907




  GWAS USING LINEAR MIXED MODELS