Project measure / variable:   Gupta2   area_kidneyR

ID, description, units MPD:39211   area_kidneyR   kidney planar surface area   [mm2]  right  
Data set, strains Gupta2   BXH   10 strains     sex: both     age: postnatal d1
Procedure organ dimensions
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  STRAIN COMPARISON PLOT
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Gupta2 - kidney planar surface area right



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means4.26   mm2 4.36   mm2
Median of the strain means4.33   mm2 4.42   mm2
SD of the strain means± 0.322 ± 0.316
Coefficient of variation (CV)0.0756 0.0725
Min–max range of strain means3.72   –   4.63   mm2 3.81   –   4.74   mm2
Mean sample size per strain12.9   mice 14.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.8886 0.8886 1.9091 0.1683
strain 9 24.5175 2.7242 5.8528 < 0.0001
sex:strain 9 1.4432 0.1604 0.3445 0.9592
Residuals 253 117.7574 0.4654


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXH10/TyJ f 4.57 0.379   13 0.105 0.083 3.95, 5.06 0.96
BXH10/TyJ m 4.63 1.02   14 0.273 0.221 3.11, 7.07 0.86
BXH11/TyJ f 4.53 0.329   7 0.124 0.0725 3.91, 4.81 0.83
BXH11/TyJ m 4.74 0.391   6 0.16 0.0825 4.07, 5.1 1.21
BXH14/TyJ f 4.34 0.935   15 0.241 0.216 3.58, 7.39 0.24
BXH14/TyJ m 4.62 0.648   16 0.162 0.14 3.65, 5.69 0.83
BXH19/TyJ f 3.73 0.437   23 0.0912 0.117 3.09, 4.76 -1.65
BXH19/TyJ m 4.0 0.431   11 0.13 0.108 3.37, 4.84 -1.13
BXH2/TyJ f 4.63 0.844   8 0.298 0.182 3.49, 5.62 1.14
BXH2/TyJ m 4.5 0.935   12 0.27 0.208 3.33, 5.78 0.45
BXH4/TyJ f 4.32 0.672   15 0.174 0.156 3.36, 5.41 0.18
BXH4/TyJ m 4.35 0.583   11 0.176 0.134 3.3, 5.38 -0.03
BXH6/TyJ f 4.31 0.63   15 0.163 0.146 2.75, 5.11 0.15
BXH6/TyJ m 4.18 0.686   14 0.183 0.164 2.66, 5.25 -0.56
BXH7/TyJ f 4.09 0.837   9 0.279 0.205 3.25, 5.77 -0.53
BXH7/TyJ m 4.12 0.936   16 0.234 0.227 2.79, 5.94 -0.75
BXH8/TyJ f 3.72 0.506   10 0.16 0.136 2.94, 4.72 -1.68
BXH8/TyJ m 3.81 0.774   19 0.178 0.203 2.41, 5.47 -1.73
BXH9/TyJ f 4.38 0.386   18 0.0911 0.0882 3.67, 5.23 0.37
BXH9/TyJ m 4.63 0.552   21 0.12 0.119 3.58, 5.45 0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ f 4.5715 0.1892 4.9442 4.1989
BXH10/TyJ m 4.63 0.1823 4.9891 4.2709
BXH11/TyJ f 4.5343 0.2579 5.0421 4.0265
BXH11/TyJ m 4.7367 0.2785 5.2852 4.1882
BXH14/TyJ f 4.338 0.1762 4.6849 3.9911
BXH14/TyJ m 4.6187 0.1706 4.9546 4.2829
BXH19/TyJ f 3.7322 0.1423 4.0123 3.452
BXH19/TyJ m 3.9982 0.2057 4.4033 3.5931
BXH2/TyJ f 4.635 0.2412 5.11 4.16
BXH2/TyJ m 4.495 0.1969 4.8829 4.1071
BXH4/TyJ f 4.32 0.1762 4.6669 3.9731
BXH4/TyJ m 4.3545 0.2057 4.7597 3.9494
BXH6/TyJ f 4.308 0.1762 4.6549 3.9611
BXH6/TyJ m 4.1757 0.1823 4.5348 3.8166
BXH7/TyJ f 4.0889 0.2274 4.5367 3.641
BXH7/TyJ m 4.125 0.1706 4.4609 3.7891
BXH8/TyJ f 3.724 0.2157 4.1489 3.2991
BXH8/TyJ m 3.8058 0.1565 4.114 3.4976
BXH9/TyJ f 4.38 0.1608 4.6967 4.0633
BXH9/TyJ m 4.6314 0.1489 4.9246 4.3382


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXH10/TyJ both 4.6008 0.1314 4.8595 4.342
BXH11/TyJ both 4.6355 0.1898 5.0092 4.2617
BXH14/TyJ both 4.4784 0.1226 4.7198 4.2369
BXH19/TyJ both 3.8652 0.125 4.1114 3.6189
BXH2/TyJ both 4.565 0.1557 4.8716 4.2584
BXH4/TyJ both 4.3373 0.1354 4.6039 4.0706
BXH6/TyJ both 4.2419 0.1268 4.4915 3.9922
BXH7/TyJ both 4.1069 0.1421 4.3869 3.827
BXH8/TyJ both 3.7649 0.1333 4.0274 3.5024
BXH9/TyJ both 4.5057 0.1096 4.7215 4.2899




  GWAS USING LINEAR MIXED MODELS