Phenotype measure:   Bopp1   survival

ID, description, units MPD:36401   survival   survival, post-infection   [d]
Plasmodium berghei study
Data set, strains Bopp1   inbred   31 strains     sex: both     age: 8-12wks
Procedure health assessment
Ontology mappings

  STRAIN COMPARISON PLOT
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Bopp1 - survival, post-infection



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested31 strains30 strains
Mean of the strain means9.03   d 9.06   d
Median of the strain means8.50   d 8.62   d
SD of the strain means± 2.89 ± 3.07
Coefficient of variation (CV)0.319 0.339
Min–max range of strain means5.67   –   16.0   d 5.75   –   17.8   d
Mean sample size per strain3.9   mice 4.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.877 0.877 0.569 0.4517
strain 29 1953.6166 67.3661 43.7105 < 0.0001
sex:strain 29 47.1688 1.6265 1.0554 0.3981
Residuals 174 268.1667 1.5412


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.0 0.0   4 0.0 0.0 11.0, 11.0 0.68
129S1/SvImJ m 10.2 0.957   4 0.479 0.0934 9.0, 11.0 0.37
A/J f 6.0 0.0   1   0.0 0.0 6.0, 6.0 -1.05
AKR/J f 11.0 0.0   4 0.0 0.0 11.0, 11.0 0.68
AKR/J m 10.5 1.0   4 0.5 0.0952 9.0, 11.0 0.47
BALB/cByJ f 9.25 1.5   4 0.75 0.162 7.0, 10.0 0.07
BALB/cByJ m 9.0 2.0   4 1.0 0.222 6.0, 10.0 -0.02
BTBR T+ Itpr3tf/J f 11.8 1.89   4 0.946 0.161 9.0, 13.0 0.96
BTBR T+ Itpr3tf/J m 12.2 0.5   4 0.25 0.0408 12.0, 13.0 1.02
BUB/BnJ f 6.5 1.0   4 0.5 0.154 5.0, 7.0 -0.88
BUB/BnJ m 6.25 1.5   4 0.75 0.24 4.0, 7.0 -0.92
C3H/HeJ f 6.0 0.816   4 0.408 0.136 5.0, 7.0 -1.05
C3H/HeJ m 6.5 0.577   4 0.289 0.0888 6.0, 7.0 -0.83
C57BL/6J f 7.0 0.0   4 0.0 0.0 7.0, 7.0 -0.7
C57BL/6J m 6.75 0.5   4 0.25 0.0741 6.0, 7.0 -0.75
C57BR/cdJ f 9.75 2.5   4 1.25 0.256 6.0, 11.0 0.25
C57BR/cdJ m 11.0 0.0   4 0.0 0.0 11.0, 11.0 0.63
C58/J f 14.0 0.0   4 0.0 0.0 14.0, 14.0 1.72
C58/J m 14.0 0.0   4 0.0 0.0 14.0, 14.0 1.61
CBA/J f 8.5 1.0   4 0.5 0.118 7.0, 9.0 -0.19
CBA/J m 8.25 0.957   4 0.479 0.116 7.0, 9.0 -0.26
CZECHII/EiJ f 6.5 0.707   2   0.5 0.109 6.0, 7.0 -0.88
CZECHII/EiJ m 6.0 0.0   3 0.0 0.0 6.0, 6.0 -1.0
DBA/2J f 13.8 0.5   4 0.25 0.0364 13.0, 14.0 1.65
DBA/2J m 12.8 0.957   4 0.479 0.0751 12.0, 14.0 1.22
FVB/NJ f 6.5 0.577   4 0.289 0.0888 6.0, 7.0 -0.88
FVB/NJ m 6.25 0.5   4 0.25 0.08 6.0, 7.0 -0.92
I/LnJ f 5.67 0.577   3 0.333 0.102 5.0, 6.0 -1.17
I/LnJ m 5.75 0.957   4 0.479 0.167 5.0, 7.0 -1.08
KK/HlJ f 9.25 0.957   4 0.479 0.104 8.0, 10.0 0.07
KK/HlJ m 9.25 0.957   4 0.479 0.104 8.0, 10.0 0.06
LG/J f 6.75 0.5   4 0.25 0.0741 6.0, 7.0 -0.79
LG/J m 6.0 0.0   4 0.0 0.0 6.0, 6.0 -1.0
MA/MyJ f 6.25 0.5   4 0.25 0.08 6.0, 7.0 -0.96
MA/MyJ m 6.5 0.577   4 0.289 0.0888 6.0, 7.0 -0.83
MRL/MpJ f 10.8 0.5   4 0.25 0.0465 10.0, 11.0 0.61
MRL/MpJ m 7.5 1.73   4 0.866 0.231 6.0, 9.0 -0.51
NOD/ShiLtJ f 10.0 0.0   4 0.0 0.0 10.0, 10.0 0.33
NOD/ShiLtJ m 9.0 1.15   4 0.577 0.128 8.0, 10.0 -0.02
NON/ShiLtJ f 9.5 1.73   4 0.866 0.182 7.0, 11.0 0.16
NON/ShiLtJ m 11.0 0.0   4 0.0 0.0 11.0, 11.0 0.63
NZO/HlLtJ f 15.0 4.0   4 2.0 0.267 9.0, 17.0 2.07
NZO/HlLtJ m 15.0 4.0   4 2.0 0.267 9.0, 17.0 1.94
NZW/LacJ f 7.75 2.06   4 1.03 0.266 6.0, 10.0 -0.45
NZW/LacJ m 7.75 2.06   4 1.03 0.266 6.0, 10.0 -0.43
PERA/EiJ f 10.2 1.5   4 0.75 0.146 8.0, 11.0 0.4
PERA/EiJ m 9.75 1.26   4 0.629 0.129 8.0, 11.0 0.23
P/J f 8.25 2.06   4 1.03 0.25 6.0, 10.0 -0.27
P/J m 9.25 0.957   4 0.479 0.104 8.0, 10.0 0.06
PL/J f 7.0 0.0   3 0.0 0.0 7.0, 7.0 -0.7
PL/J m 7.0 0.0   3 0.0 0.0 7.0, 7.0 -0.67
RIIIS/J f 6.0 0.0   4 0.0 0.0 6.0, 6.0 -1.05
RIIIS/J m 6.0 0.0   4 0.0 0.0 6.0, 6.0 -1.0
SJL/J f 6.5 0.577   4 0.289 0.0888 6.0, 7.0 -0.88
SJL/J m 6.25 0.5   4 0.25 0.08 6.0, 7.0 -0.92
SM/J f 6.75 0.5   4 0.25 0.0741 6.0, 7.0 -0.79
SM/J m 6.75 0.5   4 0.25 0.0741 6.0, 7.0 -0.75
SWR/J f 10.8 0.5   4 0.25 0.0465 10.0, 11.0 0.61
SWR/J m 11.5 0.577   4 0.289 0.0502 11.0, 12.0 0.8
WSB/EiJ f 16.0 0.0   4 0.0 0.0 16.0, 16.0 2.41
WSB/EiJ m 17.8 0.5   4 0.25 0.0282 17.0, 18.0 2.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.0 0.6207 12.2251 9.7749
129S1/SvImJ m 10.25 0.6207 11.4751 9.0249
AKR/J f 11.0 0.6207 12.2251 9.7749
AKR/J m 10.5 0.6207 11.7251 9.2749
BALB/cByJ f 9.25 0.6207 10.4751 8.0249
BALB/cByJ m 9.0 0.6207 10.2251 7.7749
BTBR T+ Itpr3tf/J f 11.75 0.6207 12.9751 10.5249
BTBR T+ Itpr3tf/J m 12.25 0.6207 13.4751 11.0249
BUB/BnJ f 6.5 0.6207 7.7251 5.2749
BUB/BnJ m 6.25 0.6207 7.4751 5.0249
C3H/HeJ f 6.0 0.6207 7.2251 4.7749
C3H/HeJ m 6.5 0.6207 7.7251 5.2749
C57BL/6J f 7.0 0.6207 8.2251 5.7749
C57BL/6J m 6.75 0.6207 7.9751 5.5249
C57BR/cdJ f 9.75 0.6207 10.9751 8.5249
C57BR/cdJ m 11.0 0.6207 12.2251 9.7749
C58/J f 14.0 0.6207 15.2251 12.7749
C58/J m 14.0 0.6207 15.2251 12.7749
CBA/J f 8.5 0.6207 9.7251 7.2749
CBA/J m 8.25 0.6207 9.4751 7.0249
CZECHII/EiJ f 6.5 0.8778 8.2326 4.7674
CZECHII/EiJ m 6.0 0.7167 7.4146 4.5854
DBA/2J f 13.75 0.6207 14.9751 12.5249
DBA/2J m 12.75 0.6207 13.9751 11.5249
FVB/NJ f 6.5 0.6207 7.7251 5.2749
FVB/NJ m 6.25 0.6207 7.4751 5.0249
I/LnJ f 5.6667 0.7167 7.0813 4.252
I/LnJ m 5.75 0.6207 6.9751 4.5249
KK/HlJ f 9.25 0.6207 10.4751 8.0249
KK/HlJ m 9.25 0.6207 10.4751 8.0249
LG/J f 6.75 0.6207 7.9751 5.5249
LG/J m 6.0 0.6207 7.2251 4.7749
MA/MyJ f 6.25 0.6207 7.4751 5.0249
MA/MyJ m 6.5 0.6207 7.7251 5.2749
MRL/MpJ f 10.75 0.6207 11.9751 9.5249
MRL/MpJ m 7.5 0.6207 8.7251 6.2749
NOD/ShiLtJ f 10.0 0.6207 11.2251 8.7749
NOD/ShiLtJ m 9.0 0.6207 10.2251 7.7749
NON/ShiLtJ f 9.5 0.6207 10.7251 8.2749
NON/ShiLtJ m 11.0 0.6207 12.2251 9.7749
NZO/HlLtJ f 15.0 0.6207 16.2251 13.7749
NZO/HlLtJ m 15.0 0.6207 16.2251 13.7749
NZW/LacJ f 7.75 0.6207 8.9751 6.5249
NZW/LacJ m 7.75 0.6207 8.9751 6.5249
PERA/EiJ f 10.25 0.6207 11.4751 9.0249
PERA/EiJ m 9.75 0.6207 10.9751 8.5249
P/J f 8.25 0.6207 9.4751 7.0249
P/J m 9.25 0.6207 10.4751 8.0249
PL/J f 7.0 0.7167 8.4146 5.5854
PL/J m 7.0 0.7167 8.4146 5.5854
RIIIS/J f 6.0 0.6207 7.2251 4.7749
RIIIS/J m 6.0 0.6207 7.2251 4.7749
SJL/J f 6.5 0.6207 7.7251 5.2749
SJL/J m 6.25 0.6207 7.4751 5.0249
SM/J f 6.75 0.6207 7.9751 5.5249
SM/J m 6.75 0.6207 7.9751 5.5249
SWR/J f 10.75 0.6207 11.9751 9.5249
SWR/J m 11.5 0.6207 12.7251 10.2749
WSB/EiJ f 16.0 0.6207 17.2251 14.7749
WSB/EiJ m 17.75 0.6207 18.9751 16.5249


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.625 0.4389 11.4913 9.7587
AKR/J both 10.75 0.4389 11.6163 9.8837
BALB/cByJ both 9.125 0.4389 9.9913 8.2587
BTBR T+ Itpr3tf/J both 12.0 0.4389 12.8663 11.1337
BUB/BnJ both 6.375 0.4389 7.2413 5.5087
C3H/HeJ both 6.25 0.4389 7.1163 5.3837
C57BL/6J both 6.875 0.4389 7.7413 6.0087
C57BR/cdJ both 10.375 0.4389 11.2413 9.5087
C58/J both 14.0 0.4389 14.8663 13.1337
CBA/J both 8.375 0.4389 9.2413 7.5087
CZECHII/EiJ both 6.25 0.5666 7.3684 5.1316
DBA/2J both 13.25 0.4389 14.1163 12.3837
FVB/NJ both 6.375 0.4389 7.2413 5.5087
I/LnJ both 5.7083 0.4741 6.644 4.7726
KK/HlJ both 9.25 0.4389 10.1163 8.3837
LG/J both 6.375 0.4389 7.2413 5.5087
MA/MyJ both 6.375 0.4389 7.2413 5.5087
MRL/MpJ both 9.125 0.4389 9.9913 8.2587
NOD/ShiLtJ both 9.5 0.4389 10.3663 8.6337
NON/ShiLtJ both 10.25 0.4389 11.1163 9.3837
NZO/HlLtJ both 15.0 0.4389 15.8663 14.1337
NZW/LacJ both 7.75 0.4389 8.6163 6.8837
PERA/EiJ both 10.0 0.4389 10.8663 9.1337
P/J both 8.75 0.4389 9.6163 7.8837
PL/J both 7.0 0.5068 8.0003 5.9997
RIIIS/J both 6.0 0.4389 6.8663 5.1337
SJL/J both 6.375 0.4389 7.2413 5.5087
SM/J both 6.75 0.4389 7.6163 5.8837
SWR/J both 11.125 0.4389 11.9913 10.2587
WSB/EiJ both 16.875 0.4389 17.7413 16.0087




  GWAS USING LINEAR MIXED MODELS