Phenotype measure:   Berndt2   airway_res_saline


  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Berndt2 - airway resistance (H20 pressure) saline



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains29 strains
Mean of the strain means0.408   cm/mL/s 0.441   cm/mL/s
Median of the strain means0.417   cm/mL/s 0.467   cm/mL/s
SD of the strain means± 0.0963 ± 0.0883
Coefficient of variation (CV)0.236 0.200
Min–max range of strain means0.256   –   0.636   cm/mL/s 0.275   –   0.611   cm/mL/s
Mean sample size per strain8.7   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1068 0.1068 13.5825 0.0003
strain 28 3.4238 0.1223 15.5524 < 0.0001
sex:strain 28 0.8217 0.0293 3.7325 < 0.0001
Residuals 462 3.6324 0.0079


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.256 0.0336   9 0.0112 0.131 0.21, 0.3 -1.57
129S1/SvImJ m 0.306 0.0632   8 0.0224 0.206 0.2, 0.4 -1.53
A/J f 0.424 0.0956   10 0.0302 0.225 0.34, 0.65 0.17
A/J m 0.506 0.119   9 0.0398 0.236 0.37, 0.72 0.74
AKR/J f 0.498 0.106   9 0.0353 0.213 0.3, 0.66 0.94
AKR/J m 0.611 0.141   8 0.0499 0.231 0.35, 0.78 1.93
BALB/cByJ f 0.411 0.0557   8 0.0197 0.135 0.34, 0.52 0.04
BALB/cByJ m 0.539 0.179   8 0.0633 0.332 0.31, 0.9 1.11
BALB/cJ f 0.449 0.0683   8 0.0242 0.152 0.38, 0.56 0.43
BALB/cJ m 0.507 0.0825   10 0.0261 0.163 0.36, 0.65 0.75
BTBR T+ Itpr3tf/J f 0.424 0.112   10 0.0353 0.264 0.26, 0.63 0.17
BTBR T+ Itpr3tf/J m 0.397 0.034   10 0.0108 0.0857 0.35, 0.46 -0.5
BUB/BnJ f 0.636 0.114   9 0.038 0.179 0.48, 0.84 2.37
BUB/BnJ m 0.499 0.0973   10 0.0308 0.195 0.38, 0.68 0.66
C3H/HeJ f 0.551 0.145   10 0.0458 0.263 0.38, 0.76 1.49
C3H/HeJ m 0.512 0.086   9 0.0287 0.168 0.41, 0.66 0.8
C57BL/10J f 0.272 0.0393   9 0.0131 0.144 0.22, 0.36 -1.41
C57BL/10J m 0.337 0.0392   10 0.0124 0.116 0.27, 0.38 -1.18
C57BL/6J f 0.321 0.0799   8 0.0282 0.249 0.23, 0.44 -0.9
C57BL/6J m 0.495 0.121   8 0.0427 0.244 0.31, 0.64 0.61
C57BLKS/J f 0.26 0.0482   9 0.0161 0.185 0.19, 0.35 -1.53
C57BLKS/J m 0.35 0.0685   12 0.0198 0.196 0.25, 0.44 -1.03
C57BR/cdJ f 0.356 0.094   7 0.0355 0.264 0.28, 0.53 -0.54
C57BR/cdJ m 0.379 0.0667   10 0.0211 0.176 0.31, 0.5 -0.7
C57L/J f 0.427 0.154   6 0.0628 0.361 0.24, 0.57 0.2
C57L/J m 0.341 0.0694   10 0.0219 0.203 0.2, 0.48 -1.13
CBA/J f 0.482 0.0945   8 0.0334 0.196 0.37, 0.65 0.77
CBA/J m 0.465 0.0422   10 0.0134 0.0908 0.41, 0.53 0.27
CE/J f 0.417 0.0442   9 0.0147 0.106 0.33, 0.47 0.1
CE/J m 0.499 0.0615   9 0.0205 0.123 0.4, 0.61 0.66
DBA/1J f 0.452 0.0839   9 0.028 0.186 0.29, 0.57 0.46
DBA/1J m 0.433 0.105   10 0.0332 0.242 0.3, 0.62 -0.09
DBA/2J f 0.365 0.0517   10 0.0163 0.142 0.31, 0.45 -0.44
DBA/2J m 0.483 0.0693   10 0.0219 0.143 0.39, 0.57 0.48
FVB/NJ f 0.451 0.103   10 0.0325 0.228 0.27, 0.67 0.45
FVB/NJ m 0.375 0.168   10 0.0533 0.449 0.17, 0.65 -0.75
I/LnJ f 0.488 0.0939   9 0.0313 0.193 0.32, 0.59 0.84
I/LnJ m 0.501 0.0412   8 0.0146 0.0822 0.42, 0.54 0.68
KK/HlJ f 0.399 0.0688   9 0.0229 0.173 0.33, 0.53 -0.09
KK/HlJ m 0.367 0.0403   10 0.0127 0.11 0.31, 0.43 -0.84
LP/J f 0.267 0.0332   9 0.0111 0.124 0.21, 0.31 -1.46
LP/J m 0.317 0.0258   10 0.00817 0.0815 0.27, 0.35 -1.4
NOD/ShiLtJ f 0.352 0.067   9 0.0223 0.19 0.22, 0.44 -0.58
NOD/ShiLtJ m 0.494 0.0828   9 0.0276 0.167 0.38, 0.6 0.6
NON/ShiLtJ f 0.57 0.154   7 0.0581 0.27 0.43, 0.87 1.69
NON/ShiLtJ m 0.467 0.086   7 0.0325 0.184 0.36, 0.6 0.29
NZW/LacJ f 0.309 0.071   8 0.0251 0.23 0.23, 0.46 -1.02
NZW/LacJ m 0.275 0.0523   10 0.0165 0.19 0.2, 0.38 -1.88
PL/J f 0.411 0.111   9 0.0371 0.27 0.26, 0.53 0.04
PL/J m 0.603 0.116   8 0.041 0.193 0.49, 0.84 1.84
RIIIS/J f 0.475 0.137   6 0.056 0.289 0.32, 0.68 0.7
RIIIS/J m 0.474 0.105   9 0.0352 0.222 0.28, 0.67 0.37
SJL/J f 0.36 0.0434   8 0.0154 0.121 0.29, 0.44 -0.49
SJL/J m 0.4 0.0532   9 0.0177 0.133 0.32, 0.47 -0.46
SM/J f 0.458 0.0704   10 0.0223 0.154 0.38, 0.55 0.52
SM/J m 0.505 0.0739   8 0.0261 0.146 0.39, 0.61 0.73
SWR/J f 0.279 0.044   9 0.0147 0.158 0.21, 0.35 -1.34
SWR/J m 0.352 0.0928   10 0.0294 0.264 0.27, 0.59 -1.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.2556 0.0296 0.3136 0.1975
129S1/SvImJ m 0.3063 0.0313 0.3679 0.2446
A/J f 0.424 0.028 0.4791 0.3689
A/J m 0.5056 0.0296 0.5636 0.4475
AKR/J f 0.4978 0.0296 0.5559 0.4397
AKR/J m 0.6113 0.0313 0.6729 0.5496
BALB/cByJ f 0.4113 0.0313 0.4729 0.3496
BALB/cByJ m 0.5388 0.0313 0.6004 0.4771
BALB/cJ f 0.4488 0.0313 0.5104 0.3871
BALB/cJ m 0.507 0.028 0.5621 0.4519
BTBR T+ Itpr3tf/J f 0.424 0.028 0.4791 0.3689
BTBR T+ Itpr3tf/J m 0.397 0.028 0.4521 0.3419
BUB/BnJ f 0.6356 0.0296 0.6936 0.5775
BUB/BnJ m 0.499 0.028 0.5541 0.4439
C3H/HeJ f 0.551 0.028 0.6061 0.4959
C3H/HeJ m 0.5122 0.0296 0.5703 0.4541
C57BL/10J f 0.2722 0.0296 0.3303 0.2141
C57BL/10J m 0.337 0.028 0.3921 0.2819
C57BL/6J f 0.3213 0.0313 0.3829 0.2596
C57BL/6J m 0.495 0.0313 0.5566 0.4334
C57BLKS/J f 0.26 0.0296 0.3181 0.2019
C57BLKS/J m 0.35 0.0256 0.4003 0.2997
C57BR/cdJ f 0.3557 0.0335 0.4216 0.2899
C57BR/cdJ m 0.379 0.028 0.4341 0.3239
C57L/J f 0.4267 0.0362 0.4978 0.3555
C57L/J m 0.341 0.028 0.3961 0.2859
CBA/J f 0.4825 0.0313 0.5441 0.4209
CBA/J m 0.465 0.028 0.5201 0.4099
CE/J f 0.4167 0.0296 0.4747 0.3586
CE/J m 0.4989 0.0296 0.557 0.4408
DBA/1J f 0.4522 0.0296 0.5103 0.3941
DBA/1J m 0.433 0.028 0.4881 0.3779
DBA/2J f 0.365 0.028 0.4201 0.3099
DBA/2J m 0.483 0.028 0.5381 0.4279
FVB/NJ f 0.451 0.028 0.5061 0.3959
FVB/NJ m 0.375 0.028 0.4301 0.3199
I/LnJ f 0.4878 0.0296 0.5459 0.4297
I/LnJ m 0.5013 0.0313 0.5629 0.4396
KK/HlJ f 0.3989 0.0296 0.457 0.3408
KK/HlJ m 0.367 0.028 0.4221 0.3119
LP/J f 0.2667 0.0296 0.3247 0.2086
LP/J m 0.317 0.028 0.3721 0.2619
NOD/ShiLtJ f 0.3522 0.0296 0.4103 0.2941
NOD/ShiLtJ m 0.4944 0.0296 0.5525 0.4364
NON/ShiLtJ f 0.57 0.0335 0.6359 0.5041
NON/ShiLtJ m 0.4671 0.0335 0.533 0.4013
NZW/LacJ f 0.3088 0.0313 0.3704 0.2471
NZW/LacJ m 0.275 0.028 0.3301 0.2199
PL/J f 0.4111 0.0296 0.4692 0.353
PL/J m 0.6025 0.0313 0.6641 0.5409
RIIIS/J f 0.475 0.0362 0.5461 0.4039
RIIIS/J m 0.4744 0.0296 0.5325 0.4164
SJL/J f 0.36 0.0313 0.4216 0.2984
SJL/J m 0.4 0.0296 0.4581 0.3419
SM/J f 0.458 0.028 0.5131 0.4029
SM/J m 0.505 0.0313 0.5666 0.4434
SWR/J f 0.2789 0.0296 0.337 0.2208
SWR/J m 0.352 0.028 0.4071 0.2969


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.2809 0.0215 0.3232 0.2386
A/J both 0.4648 0.0204 0.5048 0.4247
AKR/J both 0.5545 0.0215 0.5968 0.5122
BALB/cByJ both 0.475 0.0222 0.5186 0.4314
BALB/cJ both 0.4779 0.021 0.5192 0.4365
BTBR T+ Itpr3tf/J both 0.4105 0.0198 0.4495 0.3715
BUB/BnJ both 0.5673 0.0204 0.6073 0.5272
C3H/HeJ both 0.5316 0.0204 0.5716 0.4916
C57BL/10J both 0.3046 0.0204 0.3446 0.2646
C57BL/6J both 0.4081 0.0222 0.4517 0.3646
C57BLKS/J both 0.305 0.0195 0.3434 0.2666
C57BR/cdJ both 0.3674 0.0218 0.4103 0.3244
C57L/J both 0.3838 0.0229 0.4288 0.3388
CBA/J both 0.4738 0.021 0.5151 0.4324
CE/J both 0.4578 0.0209 0.4988 0.4167
DBA/1J both 0.4426 0.0204 0.4826 0.4026
DBA/2J both 0.424 0.0198 0.463 0.385
FVB/NJ both 0.413 0.0198 0.452 0.374
I/LnJ both 0.4945 0.0215 0.5368 0.4522
KK/HlJ both 0.3829 0.0204 0.423 0.3429
LP/J both 0.2918 0.0204 0.3319 0.2518
NOD/ShiLtJ both 0.4233 0.0209 0.4644 0.3823
NON/ShiLtJ both 0.5186 0.0237 0.5651 0.472
NZW/LacJ both 0.2919 0.021 0.3332 0.2505
PL/J both 0.5068 0.0215 0.5491 0.4645
RIIIS/J both 0.4747 0.0234 0.5206 0.4288
SJL/J both 0.38 0.0215 0.4223 0.3377
SM/J both 0.4815 0.021 0.5228 0.4402
SWR/J both 0.3154 0.0204 0.3555 0.2754




  GWAS USING LINEAR MIXED MODELS