Project measure / variable:   Schalkwyk1   laten_light_LD

ID, description, units MPD:34515   laten_light_LD   latency to enter light chamber, 5 min test   [s]  
Data set, strains Schalkwyk1   inbred   8 strains     sex: m     age: 9-11wks
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  STRAIN COMPARISON PLOT
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Schalkwyk1 - latency to enter light chamber, 5 min test



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means110   s
Median of the strain means89.9   s
SD of the strain means± 85.2
Coefficient of variation (CV)0.772
Min–max range of strain means8.50   –   262   s
Mean sample size per strain10.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 560262.3275 80037.4754 12.1355 < 0.0001
Residuals 78 514436.1445 6595.3352


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 39.6 86.9   11 26.2 2.19 4.59, 300.0 -0.83
A/J m 262.0 74.5   11 22.5 0.284 91.3, 300.0 1.78
BALB/cByJ m 212.0 132.0   11 39.9 0.623 6.02, 300.0 1.19
C3H/HeJ m 97.3 92.5   9 30.8 0.951 10.4, 254.0 -0.15
C57BL/6J m 8.5 9.25   11 2.79 1.09 1.96, 33.9 -1.2
DBA/2J m 103.0 78.8   11 23.8 0.766 3.83, 225.0 -0.09
FVB/NJ m 82.6 38.9   11 11.7 0.471 14.3, 158.0 -0.33
SJL/J m 77.9 78.5   11 23.7 1.01 17.1, 300.0 -0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 39.5782 24.4862 88.3265 0.0
A/J m 262.4818 24.4862 311.2302 213.7335
BALB/cByJ m 212.2836 24.4862 261.032 163.5353
C3H/HeJ m 97.2778 27.0706 151.1711 43.3844
C57BL/6J m 8.5036 24.4862 57.252 0.0
DBA/2J m 102.9118 24.4862 151.6602 54.1635
FVB/NJ m 82.6091 24.4862 131.3574 33.8607
SJL/J m 77.8909 24.4862 126.6393 29.1426




  GWAS USING LINEAR MIXED MODELS