Project measure / variable:   Schalkwyk1   act_periph_OFT

ID, description, units MPD:34502   act_periph_OFT   locomotor activity, periphery, 5 min test   [cm]  
Data set, strains Schalkwyk1   inbred   8 strains     sex: m     age: 9-11wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Schalkwyk1 - locomotor activity, periphery, 5 min test



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means85.1   cm
Median of the strain means88.6   cm
SD of the strain means± 47.1
Coefficient of variation (CV)0.554
Min–max range of strain means9.36   –   145   cm
Mean sample size per strain10.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 168004.2658 24000.6094 13.4512 < 0.0001
Residuals 78 139173.3737 1784.274


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 125.0 25.2   11 7.59 0.202 83.0, 166.0 0.85
A/J m 9.36 13.4   11 4.05 1.44 -1.61
BALB/cByJ m 62.4 61.0   11 18.4 0.979 -0.48
C3H/HeJ m 120.0 37.1   9 12.4 0.31 66.0, 193.0 0.74
C57BL/6J m 145.0 45.0   11 13.6 0.311 21.0, 193.0 1.27
DBA/2J m 66.2 43.4   11 13.1 0.656 -0.4
FVB/NJ m 111.0 57.5   11 17.3 0.516 5.0, 208.0 0.55
SJL/J m 41.7 32.6   11 9.83 0.781 -0.92


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 124.6364 12.736 149.9919 99.2809
A/J m 9.3636 12.736 34.7191 0.0
BALB/cByJ m 62.3636 12.736 87.7191 37.0081
C3H/HeJ m 119.7778 14.0802 147.8093 91.7462
C57BL/6J m 144.7273 12.736 170.0828 119.3718
DBA/2J m 66.1818 12.736 91.5373 40.8263
FVB/NJ m 111.2727 12.736 136.6282 85.9172
SJL/J m 41.7273 12.736 67.0828 16.3718




  GWAS USING LINEAR MIXED MODELS