Project measure / variable:   Reed1   bmi

ID, description, units MPD:32620   bmi   body mass index (BMI)   [kg/m2]  
Data set, strains Reed1   inbred   28 strains     sex: m     age: 29-67wks
Procedure body size and weight
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  STRAIN COMPARISON PLOT
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Reed1 - body mass index (BMI)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means3.88   kg/m2
Median of the strain means3.89   kg/m2
SD of the strain means± 0.321
Coefficient of variation (CV)0.0828
Min–max range of strain means3.29   –   4.70   kg/m2
Mean sample size per strain11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 32.4158 1.2006 8.9373 < 0.0001
Residuals 295 39.6286 0.1343


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 3.74 0.444   12 0.128 0.119 2.84, 4.36 -0.43
A/J m 3.42 0.193   12 0.0558 0.0565 3.09, 3.73 -1.42
AKR/J m 3.88 0.253   11 0.0764 0.0653 3.57, 4.47 0.01
BALB/cByJ m 3.9 0.33   10 0.104 0.0847 3.46, 4.57 0.07
BUB/BnJ m 4.01 0.394   11 0.119 0.0982 3.25, 4.56 0.42
C3H/HeJ m 3.58 0.34   12 0.0982 0.0949 3.17, 4.02 -0.92
C57BL/6J m 4.03 0.261   11 0.0788 0.0648 3.58, 4.48 0.48
C57L/J m 3.52 0.3   12 0.0867 0.0854 3.15, 4.2 -1.11
CAST/EiJ m 3.29 0.309   11 0.0932 0.0939 2.88, 3.86 -1.83
CBA/J m 4.28 0.5   12 0.144 0.117 3.42, 4.97 1.26
CE/J m 4.23 0.336   12 0.0971 0.0796 3.72, 4.9 1.1
DBA/2J m 3.62 0.399   12 0.115 0.11 2.98, 4.17 -0.8
FVB/NJ m 3.95 0.29   12 0.0837 0.0735 3.6, 4.68 0.23
I/LnJ m 3.76 0.253   11 0.0764 0.0673 3.29, 4.28 -0.36
KK/HlJ m 4.7 0.372   12 0.107 0.0791 4.25, 5.49 2.57
LP/J m 3.71 0.326   12 0.094 0.0877 2.99, 4.18 -0.52
NOD/ShiLtJ m 4.05 0.287   10 0.0908 0.071 3.69, 4.57 0.54
NZB/BlNJ m 3.99 0.27   11 0.0813 0.0676 3.32, 4.3 0.35
P/J m 3.73 0.326   11 0.0983 0.0874 3.29, 4.24 -0.46
PL/J m 3.56 0.242   11 0.073 0.0681 3.15, 4.01 -0.99
RBF/DnJ m 4.37 0.341   11 0.103 0.0781 3.96, 4.88 1.54
RF/J m 4.27 0.573   12 0.165 0.134 3.57, 5.47 1.23
RIIIS/J m 3.47 0.247   12 0.0714 0.0714 3.14, 3.93 -1.27
SEA/GnJ m 4.1 0.599   12 0.173 0.146 3.0, 5.27 0.7
SJL/J m 4.03 0.365   12 0.105 0.0906 3.33, 4.72 0.48
SM/J m 3.96 0.393   12 0.113 0.099 3.36, 4.42 0.26
SPRET/EiJ m 3.71 0.539   12 0.156 0.145 2.7, 4.52 -0.52
SWR/J m 3.68 0.317   12 0.0915 0.0862 3.06, 4.28 -0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 3.7433 0.1058 3.9516 3.5351
A/J m 3.4242 0.1058 3.6324 3.2159
AKR/J m 3.8782 0.1105 4.0957 3.6607
BALB/cByJ m 3.896 0.1159 4.1241 3.6679
BUB/BnJ m 4.0082 0.1105 4.2257 3.7907
C3H/HeJ m 3.5833 0.1058 3.7916 3.3751
C57BL/6J m 4.0336 0.1105 4.2511 3.8162
C57L/J m 3.515 0.1058 3.7232 3.3068
CAST/EiJ m 3.2918 0.1105 3.5093 3.0743
CBA/J m 4.2808 0.1058 4.4891 4.0726
CE/J m 4.2258 0.1058 4.4341 4.0176
DBA/2J m 3.6233 0.1058 3.8316 3.4151
FVB/NJ m 3.9475 0.1058 4.1557 3.7393
I/LnJ m 3.7645 0.1105 3.982 3.5471
KK/HlJ m 4.6975 0.1058 4.9057 4.4893
LP/J m 3.7142 0.1058 3.9224 3.5059
NOD/ShiLtJ m 4.047 0.1159 4.2751 3.8189
NZB/BlNJ m 3.9909 0.1105 4.2084 3.7734
P/J m 3.7291 0.1105 3.9466 3.5116
PL/J m 3.5573 0.1105 3.7748 3.3398
RBF/DnJ m 4.37 0.1105 4.5875 4.1525
RF/J m 4.27 0.1058 4.4782 4.0618
RIIIS/J m 3.4667 0.1058 3.6749 3.2584
SEA/GnJ m 4.0992 0.1058 4.3074 3.8909
SJL/J m 4.03 0.1058 4.2382 3.8218
SM/J m 3.9642 0.1058 4.1724 3.7559
SPRET/EiJ m 3.7125 0.1058 3.9207 3.5043
SWR/J m 3.6758 0.1058 3.8841 3.4676




  GWAS USING LINEAR MIXED MODELS