Project measure / variable:   Reed1   pct_kidneys

ID, description, units MPD:32610   pct_kidneys   kidney weight   [g]  as percent of body weight [%]  
Data set, strains Reed1   inbred   28 strains     sex: m     age: 29-67wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Reed1 - kidney weight as percent of body weight [%]



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means1.91   g
Median of the strain means1.88   g
SD of the strain means± 0.311
Coefficient of variation (CV)0.163
Min–max range of strain means1.27   –   2.65   g
Mean sample size per strain11.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 29.5672 1.0951 42.0276 < 0.0001
Residuals 294 7.6605 0.0261


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 1.91 0.219   12 0.0631 0.115 1.63, 2.43 0.01
A/J m 1.59 0.0891   12 0.0257 0.056 1.44, 1.72 -1.02
AKR/J m 1.63 0.162   11 0.049 0.0997 1.42, 1.9 -0.89
BALB/cByJ m 2.08 0.118   10 0.0372 0.0565 1.9, 2.33 0.56
BUB/BnJ m 1.79 0.154   11 0.0464 0.0861 1.56, 2.1 -0.38
C3H/HeJ m 1.95 0.146   12 0.0423 0.075 1.74, 2.24 0.14
C57BL/6J m 1.27 0.0587   10 0.0186 0.0461 1.18, 1.36 -2.04
C57L/J m 1.78 0.105   12 0.0302 0.0587 1.6, 1.97 -0.41
CAST/EiJ m 1.92 0.216   11 0.0653 0.113 1.55, 2.24 0.04
CBA/J m 1.78 0.142   12 0.041 0.0797 1.59, 2.08 -0.41
CE/J m 2.17 0.267   12 0.0771 0.123 1.69, 2.48 0.85
DBA/2J m 2.36 0.199   12 0.0575 0.0844 2.09, 2.79 1.46
FVB/NJ m 1.71 0.171   12 0.0494 0.1 1.43, 2.06 -0.63
I/LnJ m 2.49 0.107   11 0.0321 0.0429 2.32, 2.65 1.87
KK/HlJ m 1.58 0.11   12 0.0317 0.0692 1.39, 1.81 -1.05
LP/J m 2.16 0.173   12 0.05 0.08 1.85, 2.49 0.81
NOD/ShiLtJ m 1.74 0.148   10 0.0468 0.085 1.53, 1.99 -0.54
NZB/BlNJ m 1.46 0.0934   11 0.0282 0.064 1.31, 1.62 -1.43
P/J m 2.43 0.239   11 0.0721 0.0985 2.08, 2.88 1.68
PL/J m 1.72 0.148   11 0.0446 0.0862 1.57, 2.09 -0.6
RBF/DnJ m 1.97 0.104   11 0.0314 0.053 1.8, 2.13 0.2
RF/J m 1.87 0.142   12 0.041 0.0759 1.51, 2.06 -0.12
RIIIS/J m 1.88 0.0858   12 0.0248 0.0457 1.72, 2.01 -0.09
SEA/GnJ m 1.9 0.261   12 0.0753 0.137 1.38, 2.33 -0.02
SJL/J m 2.0 0.172   12 0.0495 0.0858 1.72, 2.23 0.3
SM/J m 2.65 0.133   12 0.0383 0.05 2.43, 2.92 2.39
SPRET/EiJ m 1.86 0.17   12 0.0491 0.0914 1.53, 2.13 -0.15
SWR/J m 1.74 0.119   12 0.0344 0.0685 1.51, 1.9 -0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 1.9067 0.0466 1.9984 1.815
A/J m 1.5917 0.0466 1.6834 1.5
AKR/J m 1.6282 0.0487 1.724 1.5324
BALB/cByJ m 2.084 0.051 2.1845 1.9835
BUB/BnJ m 1.7873 0.0487 1.8831 1.6915
C3H/HeJ m 1.9525 0.0466 2.0442 1.8608
C57BL/6J m 1.273 0.051 1.3735 1.1725
C57L/J m 1.78 0.0466 1.8717 1.6883
CAST/EiJ m 1.9164 0.0487 2.0121 1.8206
CBA/J m 1.7817 0.0466 1.8734 1.69
CE/J m 2.1658 0.0466 2.2575 2.0741
DBA/2J m 2.36 0.0466 2.4517 2.2683
FVB/NJ m 1.705 0.0466 1.7967 1.6133
I/LnJ m 2.4873 0.0487 2.5831 2.3915
KK/HlJ m 1.5842 0.0466 1.6759 1.4925
LP/J m 2.165 0.0466 2.2567 2.0733
NOD/ShiLtJ m 1.741 0.051 1.8415 1.6405
NZB/BlNJ m 1.4591 0.0487 1.5549 1.3633
P/J m 2.43 0.0487 2.5258 2.3342
PL/J m 1.7155 0.0487 1.8112 1.6197
RBF/DnJ m 1.9655 0.0487 2.0612 1.8697
RF/J m 1.87 0.0466 1.9617 1.7783
RIIIS/J m 1.8783 0.0466 1.97 1.7866
SEA/GnJ m 1.9042 0.0466 1.9959 1.8125
SJL/J m 2.0 0.0466 2.0917 1.9083
SM/J m 2.6542 0.0466 2.7459 2.5625
SPRET/EiJ m 1.8617 0.0466 1.9534 1.77
SWR/J m 1.7417 0.0466 1.8334 1.65




  GWAS USING LINEAR MIXED MODELS