Project measure / variable:   Reed1   pct_retroperitoneal

ID, description, units MPD:32608   pct_retroperitoneal   perirenal fat pad weight   [g]  as percent of body weight [%]  
Data set, strains Reed1   inbred   28 strains     sex: m     age: 29-67wks
Procedure fat pad weights
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  STRAIN COMPARISON PLOT
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Reed1 - perirenal fat pad weight as percent of body weight [%]



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means0.427   g
Median of the strain means0.392   g
SD of the strain means± 0.238
Coefficient of variation (CV)0.558
Min–max range of strain means0.0651   –   1.12   g
Mean sample size per strain11.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 17.3918 0.6441 12.9318 < 0.0001
Residuals 289 14.3952 0.0498


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 0.32 0.102   12 0.0295 0.319 0.124, 0.455 -0.45
A/J m 0.412 0.218   12 0.063 0.53 0.047, 0.758 -0.06
AKR/J m 0.763 0.237   11 0.0714 0.31 0.368, 1.08 1.41
BALB/cByJ m 0.166 0.0887   10 0.028 0.533 0.061, 0.317 -1.1
BUB/BnJ m 0.389 0.176   11 0.0532 0.454 0.178, 0.667 -0.16
C3H/HeJ m 0.172 0.121   7 0.0458 0.705 0.04, 0.418 -1.07
C57BL/6J m 0.58 0.179   11 0.0541 0.309 0.31, 1.01 0.64
C57L/J m 0.235 0.142   11 0.0429 0.606 0.035, 0.431 -0.81
CAST/EiJ m 0.0651 0.0885   11 0.0267 1.36 -1.52
CBA/J m 1.12 0.353   12 0.102 0.315 0.49, 1.64 2.91
CE/J m 0.515 0.225   12 0.0651 0.438 0.218, 0.896 0.37
DBA/2J m 0.395 0.27   12 0.0779 0.684 0.07, 1.11 -0.14
FVB/NJ m 0.804 0.367   12 0.106 0.457 0.5, 1.55 1.58
I/LnJ m 0.172 0.153   11 0.0463 0.89 -1.07
KK/HlJ m 0.711 0.27   12 0.078 0.38 0.276, 1.26 1.19
LP/J m 0.245 0.168   12 0.0486 0.688 -0.76
NOD/ShiLtJ m 0.309 0.109   10 0.0344 0.352 0.131, 0.448 -0.5
NZB/BlNJ m 0.274 0.13   11 0.039 0.472 0.116, 0.552 -0.64
P/J m 0.283 0.228   11 0.0688 0.808 -0.61
PL/J m 0.551 0.282   11 0.0851 0.512 0.041, 1.0 0.52
RBF/DnJ m 0.211 0.0683   11 0.0206 0.323 0.06, 0.35 -0.91
RF/J m 0.64 0.148   12 0.0427 0.231 0.422, 0.885 0.89
RIIIS/J m 0.379 0.135   12 0.039 0.357 0.158, 0.623 -0.2
SEA/GnJ m 0.594 0.477   12 0.138 0.803 0.7
SJL/J m 0.456 0.175   12 0.0504 0.383 0.234, 0.818 0.12
SM/J m 0.514 0.197   12 0.0568 0.383 0.216, 0.862 0.36
SPRET/EiJ m 0.509 0.307   12 0.0886 0.603 0.057, 1.18 0.34
SWR/J m 0.179 0.126   12 0.0363 0.703 0.037, 0.496 -1.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 0.32 0.0644 0.4468 0.1932
A/J m 0.4117 0.0644 0.5385 0.2849
AKR/J m 0.7632 0.0673 0.8956 0.6307
BALB/cByJ m 0.1664 0.0706 0.3053 0.0275
BUB/BnJ m 0.3888 0.0673 0.5213 0.2564
C3H/HeJ m 0.172 0.0844 0.338 0.006
C57BL/6J m 0.5799 0.0673 0.7124 0.4475
C57L/J m 0.2348 0.0673 0.3673 0.1024
CAST/EiJ m 0.0651 0.0673 0.1975 0.0
CBA/J m 1.1193 0.0644 1.2461 0.9924
CE/J m 0.515 0.0644 0.6418 0.3882
DBA/2J m 0.3945 0.0644 0.5213 0.2677
FVB/NJ m 0.8044 0.0644 0.9312 0.6776
I/LnJ m 0.1725 0.0673 0.3049 0.04
KK/HlJ m 0.7109 0.0644 0.8377 0.5841
LP/J m 0.2445 0.0644 0.3713 0.1177
NOD/ShiLtJ m 0.3095 0.0706 0.4484 0.1706
NZB/BlNJ m 0.2743 0.0673 0.4067 0.1418
P/J m 0.2825 0.0673 0.415 0.1501
PL/J m 0.5513 0.0673 0.6837 0.4188
RBF/DnJ m 0.2114 0.0673 0.3438 0.0789
RF/J m 0.6404 0.0644 0.7672 0.5136
RIIIS/J m 0.3791 0.0644 0.5059 0.2523
SEA/GnJ m 0.5943 0.0644 0.7211 0.4675
SJL/J m 0.456 0.0644 0.5828 0.3292
SM/J m 0.5136 0.0644 0.6404 0.3868
SPRET/EiJ m 0.5088 0.0644 0.6356 0.3819
SWR/J m 0.1789 0.0644 0.3057 0.0521




  GWAS USING LINEAR MIXED MODELS