Project measure / variable:   Reed1   retroperitoneal_fat

ID, description, units MPD:32607   retroperitoneal_fat   perirenal fat pad weight   [g]  weight [g]  
Data set, strains Reed1   inbred   28 strains     sex: m     age: 29-67wks
Procedure fat pad weights
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  STRAIN COMPARISON PLOT
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Reed1 - perirenal fat pad weight weight [g]



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means0.136   g
Median of the strain means0.111   g
SD of the strain means± 0.0894
Coefficient of variation (CV)0.655
Min–max range of strain means0.0127   –   0.396   g
Mean sample size per strain11.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 2.4819 0.0919 13.2775 < 0.0001
Residuals 289 2.0008 0.0069


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 0.085 0.034   12 0.00981 0.4 0.03, 0.13 -0.58
A/J m 0.106 0.0632   12 0.0182 0.597 0.01, 0.2 -0.34
AKR/J m 0.266 0.0936   11 0.0282 0.351 0.12, 0.37 1.45
BALB/cByJ m 0.052 0.0244   10 0.00772 0.469 0.02, 0.09 -0.94
BUB/BnJ m 0.131 0.0649   11 0.0196 0.496 0.05, 0.23 -0.06
C3H/HeJ m 0.05 0.0387   7 0.0146 0.775 0.01, 0.13 -0.97
C57BL/6J m 0.181 0.0667   11 0.0201 0.369 0.09, 0.35 0.5
C57L/J m 0.07 0.0471   11 0.0142 0.673 0.01, 0.14 -0.74
CAST/EiJ m 0.0127 0.0174   11 0.00524 1.37 -1.38
CBA/J m 0.396 0.156   12 0.0449 0.393 0.16, 0.65 2.9
CE/J m 0.197 0.102   12 0.0295 0.52 0.08, 0.38 0.68
DBA/2J m 0.116 0.0914   12 0.0264 0.789 0.02, 0.36 -0.23
FVB/NJ m 0.239 0.13   12 0.0375 0.543 0.14, 0.51 1.15
I/LnJ m 0.0509 0.0464   11 0.014 0.911 -0.96
KK/HlJ m 0.297 0.117   12 0.0337 0.394 0.12, 0.5 1.79
LP/J m 0.0725 0.0529   12 0.0153 0.73 -0.72
NOD/ShiLtJ m 0.101 0.0381   10 0.0121 0.378 0.04, 0.16 -0.4
NZB/BlNJ m 0.1 0.051   11 0.0154 0.51 0.04, 0.21 -0.41
P/J m 0.0818 0.0697   11 0.021 0.852 -0.61
PL/J m 0.14 0.0768   11 0.0232 0.549 0.01, 0.29 0.04
RBF/DnJ m 0.0791 0.023   11 0.00694 0.291 0.02, 0.1 -0.64
RF/J m 0.247 0.0742   12 0.0214 0.3 0.15, 0.39 1.24
RIIIS/J m 0.0825 0.0305   12 0.0088 0.37 0.03, 0.13 -0.6
SEA/GnJ m 0.224 0.212   12 0.0611 0.944 0.98
SJL/J m 0.131 0.0528   12 0.0152 0.404 0.07, 0.23 -0.06
SM/J m 0.148 0.0609   12 0.0176 0.413 0.06, 0.26 0.13
SPRET/EiJ m 0.117 0.0797   12 0.023 0.683 0.01, 0.3 -0.22
SWR/J m 0.0475 0.0333   12 0.00962 0.702 0.01, 0.13 -0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 0.085 0.024 0.1323 0.0377
A/J m 0.1058 0.024 0.1531 0.0586
AKR/J m 0.2664 0.0251 0.3157 0.217
BALB/cByJ m 0.052 0.0263 0.1038 0.0002
BUB/BnJ m 0.1309 0.0251 0.1803 0.0815
C3H/HeJ m 0.05 0.0314 0.1119 0.0
C57BL/6J m 0.1809 0.0251 0.2303 0.1315
C57L/J m 0.07 0.0251 0.1194 0.0206
CAST/EiJ m 0.0127 0.0251 0.0621 0.0
CBA/J m 0.3958 0.024 0.4431 0.3486
CE/J m 0.1967 0.024 0.2439 0.1494
DBA/2J m 0.1158 0.024 0.1631 0.0686
FVB/NJ m 0.2392 0.024 0.2864 0.1919
I/LnJ m 0.0509 0.0251 0.1003 0.0015
KK/HlJ m 0.2967 0.024 0.3439 0.2494
LP/J m 0.0725 0.024 0.1198 0.0252
NOD/ShiLtJ m 0.101 0.0263 0.1528 0.0492
NZB/BlNJ m 0.1 0.0251 0.1494 0.0506
P/J m 0.0818 0.0251 0.1312 0.0324
PL/J m 0.14 0.0251 0.1894 0.0906
RBF/DnJ m 0.0791 0.0251 0.1285 0.0297
RF/J m 0.2475 0.024 0.2948 0.2002
RIIIS/J m 0.0825 0.024 0.1298 0.0352
SEA/GnJ m 0.2242 0.024 0.2714 0.1769
SJL/J m 0.1308 0.024 0.1781 0.0836
SM/J m 0.1475 0.024 0.1948 0.1002
SPRET/EiJ m 0.1167 0.024 0.1639 0.0694
SWR/J m 0.0475 0.024 0.0948 0.0002




  GWAS USING LINEAR MIXED MODELS