Project measure / variable:   Paigen1   bw_chg

ID, description, units MPD:2933   bw_chg   body weight   [g]  fold change  
high-fat diet study
Data set, strains Paigen1   inbred   38 strains     sex: both     age: 7-11wks
Procedure body weight
Ontology mappings

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  STRAIN COMPARISON PLOT
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Paigen1 - body weight fold change



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains37 strains
Mean of the strain means1.20   g 1.16   g
Median of the strain means1.21   g 1.17   g
SD of the strain means± 0.0932 ± 0.0960
Coefficient of variation (CV)0.0778 0.0829
Min–max range of strain means0.975   –   1.47   g 0.937   –   1.34   g
Mean sample size per strain10.0   mice 9.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.3768 0.3768 22.8799 < 0.0001
strain 36 3.5323 0.0981 5.9579 < 0.0001
sex:strain 36 2.9589 0.0822 4.9906 < 0.0001
Residuals 662 10.9025 0.0165


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.2 0.162   10 0.0512 0.134 1.01, 1.55 0.02
129S1/SvImJ m 1.17 0.101   10 0.032 0.0862 1.03, 1.32 0.12
A/J f 0.975 0.128   10 0.0406 0.132 0.652, 1.08 -2.4
A/J m 1.0 0.127   10 0.0402 0.127 0.765, 1.15 -1.65
AKR/J f 1.1 0.228   10 0.0722 0.208 0.88, 1.63 -1.06
AKR/J m 1.26 0.123   10 0.039 0.098 0.982, 1.44 1.06
BALB/cJ f 1.26 0.0888   10 0.0281 0.0705 1.11, 1.4 0.66
BALB/cJ m 1.25 0.152   10 0.0481 0.122 1.05, 1.6 0.95
BPH/2J f 1.29 0.0536   10 0.017 0.0415 1.22, 1.4 0.98
BPH/2J m 1.1 0.0792   9 0.0264 0.0717 0.987, 1.2 -0.61
BPL/1J f 1.47 0.123   10 0.039 0.0838 1.22, 1.66 2.91
BPL/1J m 0.937 0.0965   10 0.0305 0.103 0.851, 1.15 -2.31
BPN/3J f 1.17 0.152   10 0.0482 0.13 0.916, 1.41 -0.31
BPN/3J m 1.33 0.148   9 0.0495 0.112 1.12, 1.58 1.79
BTBR T+ Itpr3tf/J f 1.18 0.0834   9 0.0278 0.0705 1.07, 1.29 -0.2
BTBR T+ Itpr3tf/J m 1.18 0.0622   16 0.0156 0.0526 1.1, 1.34 0.22
C3H/HeJ f 1.35 0.176   10 0.0556 0.13 1.12, 1.76 1.62
C3H/HeJ m 1.08 0.104   10 0.0329 0.096 0.895, 1.2 -0.82
C57BL/10J f 1.22 0.0862   10 0.0273 0.0707 1.07, 1.35 0.23
C57BL/10J m 1.1 0.0698   10 0.0221 0.0633 0.989, 1.22 -0.61
C57BL/6J f 1.12 0.0976   19 0.0224 0.0874 0.889, 1.29 -0.84
C57BL/6J m 0.976 0.0779   15 0.0201 0.0798 0.855, 1.13 -1.9
C57BLKS/J f 1.1 0.0868   27 0.0167 0.0788 0.94, 1.26 -1.06
C57BLKS/J m 1.04 0.0662   17 0.0161 0.0639 0.93, 1.2 -1.23
C57BR/cdJ f 1.07 0.0606   10 0.0192 0.0566 0.99, 1.18 -1.38
C57BR/cdJ m 1.13 0.106   10 0.0336 0.0938 1.0, 1.28 -0.3
C57L/J f 1.23 0.071   10 0.0224 0.0576 1.11, 1.33 0.34
C57L/J m 1.16 0.0762   10 0.0241 0.0656 1.06, 1.31 0.02
C58/J f 1.12 0.155   10 0.0489 0.138 0.934, 1.42 -0.84
C58/J m 1.06 0.0619   10 0.0196 0.0586 0.929, 1.14 -1.03
CAST/EiJ f 1.13 0.137   9 0.0455 0.121 0.881, 1.33 -0.74
CAST/EiJ m 1.16 0.0907   9 0.0302 0.0782 1.04, 1.31 0.02
CBA/J f 1.13 0.163   10 0.0515 0.145 0.917, 1.43 -0.74
CBA/J m 1.24 0.134   10 0.0424 0.108 1.0, 1.41 0.85
CE/J f 1.15 0.157   10 0.0497 0.137 0.844, 1.33 -0.52
CE/J m 1.09 0.176   7 0.0667 0.162 0.891, 1.33 -0.71
DBA/1J f 1.23 0.168   10 0.053 0.136 1.01, 1.5 0.34
DBA/1J m 1.15 0.189   9 0.063 0.164 0.86, 1.42 -0.09
DBA/2J f 1.34 0.24   10 0.0757 0.178 0.916, 1.72 1.52
DBA/2J m 1.3 0.218   9 0.0728 0.167 0.977, 1.7 1.47
FVB/NJ f 1.21 0.0808   10 0.0255 0.0668 1.07, 1.31 0.12
FVB/NJ m 1.16 0.111   3 0.0641 0.0958 1.06, 1.28 0.02
I/LnJ f 1.17 0.0659   10 0.0209 0.0564 1.07, 1.31 -0.31
I/LnJ m 1.16 0.202   10 0.0639 0.174 0.968, 1.67 0.02
KK/HlJ f 1.25 0.149   9 0.0498 0.119 1.05, 1.53 0.55
KK/HlJ m 0.981 0.14   9 0.0467 0.143 0.697, 1.19 -1.85
LP/J f 1.23 0.135   10 0.0425 0.109 1.07, 1.51 0.34
LP/J m 1.22 0.0926   10 0.0293 0.0759 1.03, 1.34 0.64
NOD/ShiLtJ f 1.24 0.258   10 0.0815 0.207 0.699, 1.56 0.44
NOD/ShiLtJ m 1.17 0.0531   7 0.0201 0.0452 1.13, 1.29 0.12
NON/ShiLtJ f 1.15 0.0698   10 0.0221 0.0609 1.02, 1.24 -0.52
NON/ShiLtJ m 1.08 0.048   10 0.0152 0.0446 1.02, 1.17 -0.82
NZB/BlNJ f 1.24 0.109   10 0.0345 0.0883 1.09, 1.45 0.44
NZB/BlNJ m 1.28 0.207   9 0.0689 0.161 1.14, 1.83 1.27
NZW/LacJ f 1.24 0.148   8 0.0523 0.12 1.04, 1.51 0.44
NZW/LacJ m 1.21 0.0791   10 0.025 0.0654 1.1, 1.32 0.54
P/J f 1.21 0.193   10 0.0609 0.159 0.939, 1.46 0.12
P/J m 1.23 0.0925   10 0.0293 0.0753 1.12, 1.44 0.74
PL/J f 1.21 0.146   10 0.0462 0.121 0.995, 1.54 0.12
PL/J m 1.18 0.155   3 0.0895 0.132 1.01, 1.31 0.22
RBF/DnJ f 1.18 0.111   10 0.0352 0.094 1.05, 1.38 -0.2
RBF/DnJ m 1.17 0.059   9 0.0197 0.0505 1.1, 1.27 0.12
RF/J f 1.21 0.0504   10 0.0159 0.0416 1.11, 1.27 0.12
RF/J m 1.22 0.0131   6 0.00535 0.0107 1.21, 1.24 0.64
RIIIS/J f 1.11 0.243   10 0.077 0.22 0.746, 1.66 -0.95
RIIIS/J m 1.19 0.148   9 0.0492 0.124 0.934, 1.42 0.33
SEA/GnJ f 1.29 0.0911   9 0.0304 0.0706 1.14, 1.39 0.98
SEA/GnJ m 1.2 0.142   10 0.0448 0.118 0.989, 1.41 0.43
SJL/J f 1.16 0.122   10 0.0387 0.105 0.898, 1.34 -0.41
SJL/J m 1.21 0.0476   9 0.0159 0.0393 1.15, 1.27 0.54
SM/J f 1.22 0.075   8 0.0265 0.0614 1.15, 1.35 0.23
SM/J m 1.34 0.164   6 0.0669 0.123 1.08, 1.51 1.89
SWR/J f 1.35 0.0769   10 0.0243 0.0571 1.23, 1.47 1.62
SWR/J m 1.15 0.116   8 0.0409 0.101 0.966, 1.31 -0.09
YBR/EiJ f 1.04 0.186   5 0.0831 0.178 0.834, 1.26 -1.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.2039 0.0406 1.2836 1.1242
129S1/SvImJ m 1.1743 0.0406 1.254 1.0946
A/J f 0.975 0.0406 1.0547 0.8953
A/J m 1.0017 0.0406 1.0814 0.922
AKR/J f 1.0982 0.0406 1.1779 1.0185
AKR/J m 1.2578 0.0406 1.3375 1.1781
BALB/cJ f 1.26 0.0406 1.3397 1.1803
BALB/cJ m 1.2455 0.0406 1.3252 1.1658
BPH/2J f 1.2933 0.0406 1.373 1.2136
BPH/2J m 1.105 0.0428 1.189 1.021
BPL/1J f 1.4722 0.0406 1.5519 1.3925
BPL/1J m 0.9368 0.0406 1.0165 0.8571
BPN/3J f 1.1737 0.0406 1.2534 1.094
BPN/3J m 1.326 0.0428 1.41 1.242
BTBR T+ Itpr3tf/J f 1.1828 0.0428 1.2668 1.0988
BTBR T+ Itpr3tf/J m 1.182 0.0321 1.245 1.119
C3H/HeJ f 1.3502 0.0406 1.4299 1.2705
C3H/HeJ m 1.0847 0.0406 1.1644 1.005
C57BL/10J f 1.2193 0.0406 1.299 1.1396
C57BL/10J m 1.1026 0.0406 1.1823 1.0229
C57BL/6J f 1.1165 0.0294 1.1743 1.0587
C57BL/6J m 0.9763 0.0331 1.0414 0.9113
C57BLKS/J f 1.1021 0.0247 1.1506 1.0536
C57BLKS/J m 1.0364 0.0311 1.0975 0.9752
C57BR/cdJ f 1.0712 0.0406 1.1509 0.9915
C57BR/cdJ m 1.1332 0.0406 1.2129 1.0535
C57L/J f 1.2312 0.0406 1.3109 1.1515
C57L/J m 1.1625 0.0406 1.2422 1.0828
C58/J f 1.1231 0.0406 1.2028 1.0434
C58/J m 1.0561 0.0406 1.1358 0.9764
CAST/EiJ f 1.1337 0.0428 1.2177 1.0497
CAST/EiJ m 1.1597 0.0428 1.2437 1.0757
CBA/J f 1.1265 0.0406 1.2062 1.0468
CBA/J m 1.2444 0.0406 1.3241 1.1647
CE/J f 1.1452 0.0406 1.2249 1.0655
CE/J m 1.0907 0.0485 1.186 0.9955
DBA/1J f 1.2311 0.0406 1.3108 1.1514
DBA/1J m 1.1548 0.0428 1.2388 1.0708
DBA/2J f 1.3425 0.0406 1.4222 1.2628
DBA/2J m 1.3048 0.0428 1.3888 1.2208
FVB/NJ f 1.2089 0.0406 1.2886 1.1292
FVB/NJ m 1.159 0.0741 1.3045 1.0135
I/LnJ f 1.1698 0.0406 1.2495 1.0901
I/LnJ m 1.1594 0.0406 1.2391 1.0797
KK/HlJ f 1.2518 0.0428 1.3358 1.1678
KK/HlJ m 0.9814 0.0428 1.0654 0.8974
LP/J f 1.2295 0.0406 1.3092 1.1498
LP/J m 1.2189 0.0406 1.2986 1.1392
NOD/ShiLtJ f 1.2429 0.0406 1.3226 1.1632
NOD/ShiLtJ m 1.1736 0.0485 1.2688 1.0783
NON/ShiLtJ f 1.1467 0.0406 1.2264 1.067
NON/ShiLtJ m 1.0779 0.0406 1.1576 0.9982
NZB/BlNJ f 1.2352 0.0406 1.3149 1.1555
NZB/BlNJ m 1.2834 0.0428 1.3674 1.1994
NZW/LacJ f 1.2368 0.0454 1.3258 1.1477
NZW/LacJ m 1.2089 0.0406 1.2886 1.1292
P/J f 1.2118 0.0406 1.2915 1.1321
P/J m 1.2292 0.0406 1.3089 1.1495
PL/J f 1.2119 0.0406 1.2916 1.1322
PL/J m 1.1787 0.0741 1.3242 1.0332
RBF/DnJ f 1.1839 0.0406 1.2636 1.1042
RBF/DnJ m 1.168 0.0428 1.252 1.084
RF/J f 1.212 0.0406 1.2917 1.1323
RF/J m 1.2213 0.0524 1.3242 1.1185
RIIIS/J f 1.106 0.0406 1.1857 1.0263
RIIIS/J m 1.1933 0.0428 1.2773 1.1093
SEA/GnJ f 1.2894 0.0428 1.3734 1.2054
SEA/GnJ m 1.2022 0.0406 1.2819 1.1225
SJL/J f 1.1604 0.0406 1.2401 1.0807
SJL/J m 1.2122 0.0428 1.2962 1.1282
SM/J f 1.2214 0.0454 1.3105 1.1323
SM/J m 1.3383 0.0524 1.4412 1.2355
SWR/J f 1.3468 0.0406 1.4265 1.2671
SWR/J m 1.1499 0.0454 1.239 1.0608


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.1891 0.0287 1.2454 1.1328
A/J both 0.9884 0.0287 1.0447 0.932
AKR/J both 1.178 0.0287 1.2343 1.1217
BALB/cJ both 1.2528 0.0287 1.3091 1.1964
BPH/2J both 1.1992 0.0295 1.257 1.1413
BPL/1J both 1.2045 0.0287 1.2608 1.1482
BPN/3J both 1.2499 0.0295 1.3077 1.192
BTBR T+ Itpr3tf/J both 1.1824 0.0267 1.2349 1.1299
C3H/HeJ both 1.2175 0.0287 1.2738 1.1611
C57BL/10J both 1.161 0.0287 1.2173 1.1046
C57BL/6J both 1.0464 0.0222 1.0899 1.0029
C57BLKS/J both 1.0692 0.0199 1.1082 1.0302
C57BR/cdJ both 1.1022 0.0287 1.1585 1.0459
C57L/J both 1.1969 0.0287 1.2532 1.1405
C58/J both 1.0896 0.0287 1.1459 1.0333
CAST/EiJ both 1.1467 0.0302 1.2061 1.0873
CBA/J both 1.1855 0.0287 1.2418 1.1291
CE/J both 1.118 0.0316 1.18 1.0559
DBA/1J both 1.1929 0.0295 1.2508 1.135
DBA/2J both 1.3236 0.0295 1.3815 1.2657
FVB/NJ both 1.184 0.0422 1.2669 1.101
I/LnJ both 1.1646 0.0287 1.2209 1.1083
KK/HlJ both 1.1166 0.0302 1.176 1.0572
LP/J both 1.2242 0.0287 1.2805 1.1679
NOD/ShiLtJ both 1.2082 0.0316 1.2703 1.1461
NON/ShiLtJ both 1.1123 0.0287 1.1686 1.056
NZB/BlNJ both 1.2593 0.0295 1.3172 1.2014
NZW/LacJ both 1.2228 0.0304 1.2826 1.1631
P/J both 1.2205 0.0287 1.2768 1.1642
PL/J both 1.1953 0.0422 1.2782 1.1123
RBF/DnJ both 1.176 0.0295 1.2338 1.1181
RF/J both 1.2167 0.0331 1.2817 1.1516
RIIIS/J both 1.1497 0.0295 1.2076 1.0918
SEA/GnJ both 1.2458 0.0295 1.3037 1.1879
SJL/J both 1.1863 0.0295 1.2442 1.1284
SM/J both 1.2799 0.0347 1.3479 1.2118
SWR/J both 1.2483 0.0304 1.3081 1.1886




  GWAS USING LINEAR MIXED MODELS