Project measure / variable:   Paigen1   initbw

ID, description, units MPD:2905   initbw   body weight   [g]  start  
high-fat diet study
Data set, strains Paigen1   inbred   38 strains     sex: both     age: 7-11wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Paigen1 - body weight start



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested38 strains37 strains
Mean of the strain means20.6   g 25.0   g
Median of the strain means19.4   g 25.4   g
SD of the strain means± 3.75 ± 3.55
Coefficient of variation (CV)0.182 0.142
Min–max range of strain means12.3   –   30.4   g 13.9   –   32.6   g
Mean sample size per strain10.4   mice 12.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4555.091 4555.091 1366.8895 < 0.0001
strain 36 9697.2789 269.3689 80.8321 < 0.0001
sex:strain 36 886.9348 24.6371 7.3931 < 0.0001
Residuals 786 2619.3058 3.3325


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 19.4 1.49   10 0.471 0.0769 15.9, 21.4 -0.32
129S1/SvImJ m 24.6 1.78   10 0.562 0.0722 22.1, 28.1 -0.11
A/J f 21.1 1.32   11 0.397 0.0623 18.2, 23.2 0.14
A/J m 22.6 1.83   10 0.579 0.0811 20.1, 26.4 -0.68
AKR/J f 30.4 3.81   11 1.15 0.125 25.1, 36.7 2.62
AKR/J m 30.0 1.99   10 0.629 0.0662 27.0, 34.3 1.41
BALB/cJ f 20.8 0.979   10 0.309 0.047 19.5, 22.7 0.06
BALB/cJ m 25.7 0.932   10 0.295 0.0362 24.6, 27.2 0.2
BPH/2J f 16.6 1.16   10 0.367 0.0697 14.2, 18.2 -1.06
BPH/2J m 21.1 1.43   10 0.451 0.0677 18.9, 22.9 -1.1
BPL/1J f 17.9 0.614   10 0.194 0.0344 17.1, 18.9 -0.72
BPL/1J m 22.7 1.67   10 0.529 0.0738 18.9, 24.3 -0.65
BPN/3J f 20.3 1.51   10 0.478 0.0744 17.9, 22.7 -0.08
BPN/3J m 23.9 2.48   10 0.783 0.103 17.7, 26.4 -0.31
BTBR T+ Itpr3tf/J f 25.2 2.25   9 0.749 0.0891 22.0, 28.8 1.23
BTBR T+ Itpr3tf/J m 29.6 1.57   16 0.393 0.053 26.9, 32.6 1.29
C3H/HeJ f 17.7 1.28   10 0.405 0.0725 16.1, 20.1 -0.77
C3H/HeJ m 26.4 2.78   23 0.579 0.105 21.6, 31.0 0.39
C57BL/10J f 18.6 0.864   10 0.273 0.0464 17.3, 20.0 -0.53
C57BL/10J m 27.2 1.3   10 0.411 0.0478 25.0, 29.8 0.62
C57BL/6J f 19.3 1.55   20 0.347 0.0804 17.2, 22.9 -0.34
C57BL/6J m 25.9 1.52   20 0.34 0.0586 23.7, 29.1 0.25
C57BLKS/J f 18.8 1.1   27 0.212 0.0587 17.0, 22.1 -0.48
C57BLKS/J m 23.8 0.911   29 0.169 0.0383 21.9, 25.7 -0.34
C57BR/cdJ f 18.7 0.832   10 0.263 0.0445 17.1, 19.5 -0.5
C57BR/cdJ m 25.9 1.33   10 0.42 0.0512 23.4, 27.8 0.25
C57L/J f 19.3 1.29   10 0.409 0.0671 16.8, 20.7 -0.34
C57L/J m 25.4 1.68   10 0.531 0.0661 22.6, 27.6 0.11
C58/J f 19.4 2.03   11 0.613 0.105 15.8, 21.9 -0.32
C58/J m 24.4 1.61   10 0.509 0.066 21.4, 26.2 -0.17
CAST/EiJ f 12.3 0.894   10 0.283 0.0729 11.2, 13.6 -2.21
CAST/EiJ m 13.9 0.972   10 0.307 0.0697 12.0, 15.1 -3.13
CBA/J f 21.5 2.27   10 0.717 0.106 18.9, 25.6 0.25
CBA/J m 26.1 1.91   10 0.603 0.0729 23.8, 28.4 0.31
CE/J f 24.2 2.2   10 0.695 0.0908 20.9, 28.2 0.97
CE/J m 25.5 2.65   15 0.683 0.104 20.5, 30.5 0.14
DBA/1J f 19.5 2.1   10 0.664 0.108 15.6, 23.1 -0.29
DBA/1J m 21.8 2.72   10 0.861 0.125 15.9, 25.7 -0.9
DBA/2J f 20.1 2.1   10 0.664 0.104 15.0, 22.5 -0.13
DBA/2J m 27.0 2.35   10 0.743 0.087 22.5, 30.8 0.56
FVB/NJ f 20.1 1.45   10 0.458 0.072 17.9, 22.4 -0.13
FVB/NJ m 25.4 2.01   19 0.461 0.0792 20.0, 27.9 0.11
I/LnJ f 19.2 1.03   10 0.325 0.0535 17.5, 20.9 -0.37
I/LnJ m 23.0 3.45   10 1.09 0.15 13.8, 25.9 -0.56
KK/HlJ f 28.1 2.04   10 0.644 0.0724 25.8, 31.7 2.01
KK/HlJ m 30.0 1.95   19 0.448 0.065 26.3, 33.8 1.41
LP/J f 19.1 1.42   10 0.449 0.0743 17.2, 21.7 -0.4
LP/J m 27.3 1.93   10 0.61 0.0706 24.9, 30.8 0.65
NOD/ShiLtJ f 21.3 1.6   10 0.507 0.0754 19.4, 23.5 0.19
NOD/ShiLtJ m 25.8 1.49   13 0.413 0.0577 23.5, 28.2 0.22
NON/ShiLtJ f 27.0 1.3   10 0.41 0.0481 25.2, 28.9 1.71
NON/ShiLtJ m 32.6 1.18   10 0.373 0.0362 31.1, 34.5 2.14
NZB/BlNJ f 22.5 2.23   10 0.706 0.0991 17.4, 25.3 0.51
NZB/BlNJ m 27.8 3.27   9 1.09 0.117 20.4, 31.2 0.79
NZW/LacJ f 24.2 1.98   12 0.57 0.0817 20.8, 26.4 0.97
NZW/LacJ m 29.4 2.31   11 0.696 0.0785 24.5, 31.9 1.24
P/J f 18.1 2.32   10 0.735 0.128 13.6, 21.2 -0.66
P/J m 21.9 2.38   10 0.753 0.108 16.8, 24.2 -0.87
PL/J f 17.4 1.6   10 0.505 0.092 13.8, 19.1 -0.85
PL/J m 21.7 1.69   17 0.41 0.078 17.9, 24.9 -0.93
RBF/DnJ f 25.3 1.44   10 0.455 0.0569 23.5, 27.5 1.26
RBF/DnJ m 28.6 1.55   11 0.466 0.0541 26.3, 30.5 1.01
RF/J f 28.1 1.42   10 0.45 0.0506 26.7, 30.8 2.01
RF/J m 28.7 1.88   11 0.566 0.0654 25.9, 31.9 1.04
RIIIS/J f 18.2 1.92   10 0.608 0.106 13.7, 20.9 -0.64
RIIIS/J m 22.7 1.97   12 0.569 0.0869 19.4, 25.9 -0.65
SEA/GnJ f 20.5 1.04   9 0.346 0.0507 18.9, 22.2 -0.02
SEA/GnJ m 23.6 2.33   10 0.738 0.0987 20.4, 26.5 -0.39
SJL/J f 19.3 1.69   10 0.535 0.0878 16.9, 22.6 -0.34
SJL/J m 22.5 1.01   10 0.319 0.0448 21.0, 24.3 -0.7
SM/J f 14.8 0.829   10 0.262 0.0559 13.6, 16.0 -1.54
SM/J m 18.6 1.8   12 0.52 0.0968 16.4, 22.8 -1.8
SWR/J f 16.8 0.908   10 0.287 0.0541 15.2, 18.0 -1.01
SWR/J m 22.0 2.09   13 0.579 0.0951 18.9, 26.9 -0.85
YBR/EiJ f 21.0 1.44   5 0.644 0.0686 18.8, 22.8 0.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 19.36 0.5773 20.4932 18.2268
129S1/SvImJ m 24.62 0.5773 25.7532 23.4868
A/J f 21.1273 0.5504 22.2077 20.0468
A/J m 22.59 0.5773 23.7232 21.4568
AKR/J f 30.3909 0.5504 31.4714 29.3105
AKR/J m 30.02 0.5773 31.1532 28.8868
BALB/cJ f 20.83 0.5773 21.9632 19.6968
BALB/cJ m 25.73 0.5773 26.8632 24.5968
BPH/2J f 16.64 0.5773 17.7732 15.5068
BPH/2J m 21.08 0.5773 22.2132 19.9468
BPL/1J f 17.88 0.5773 19.0132 16.7468
BPL/1J m 22.67 0.5773 23.8032 21.5368
BPN/3J f 20.31 0.5773 21.4432 19.1768
BPN/3J m 23.94 0.5773 25.0732 22.8068
BTBR T+ Itpr3tf/J f 25.2 0.6085 26.3945 24.0055
BTBR T+ Itpr3tf/J m 29.6187 0.4564 30.5146 28.7229
C3H/HeJ f 17.66 0.5773 18.7932 16.5268
C3H/HeJ m 26.3739 0.3806 27.1211 25.6267
C57BL/10J f 18.63 0.5773 19.7632 17.4968
C57BL/10J m 27.19 0.5773 28.3232 26.0568
C57BL/6J f 19.305 0.4082 20.1063 18.5037
C57BL/6J m 25.9 0.4082 26.7013 25.0987
C57BLKS/J f 18.7778 0.3513 19.4674 18.0881
C57BLKS/J m 23.7828 0.339 24.4482 23.1173
C57BR/cdJ f 18.69 0.5773 19.8232 17.5568
C57BR/cdJ m 25.93 0.5773 27.0632 24.7968
C57L/J f 19.26 0.5773 20.3932 18.1268
C57L/J m 25.42 0.5773 26.5532 24.2868
C58/J f 19.4091 0.5504 20.4895 18.3286
C58/J m 24.41 0.5773 25.5432 23.2768
CAST/EiJ f 12.27 0.5773 13.4032 11.1368
CAST/EiJ m 13.94 0.5773 15.0732 12.8068
CBA/J f 21.48 0.5773 22.6132 20.3468
CBA/J m 26.14 0.5773 27.2732 25.0068
CE/J f 24.2 0.5773 25.3332 23.0668
CE/J m 25.4533 0.4713 26.3786 24.5281
DBA/1J f 19.47 0.5773 20.6032 18.3368
DBA/1J m 21.78 0.5773 22.9132 20.6468
DBA/2J f 20.09 0.5773 21.2232 18.9568
DBA/2J m 27.0 0.5773 28.1332 25.8668
FVB/NJ f 20.11 0.5773 21.2432 18.9768
FVB/NJ m 25.3789 0.4188 26.201 24.5569
I/LnJ f 19.21 0.5773 20.3432 18.0768
I/LnJ m 23.0 0.5773 24.1332 21.8668
KK/HlJ f 28.11 0.5773 29.2432 26.9768
KK/HlJ m 30.0474 0.4188 30.8695 29.2253
LP/J f 19.11 0.5773 20.2432 17.9768
LP/J m 27.32 0.5773 28.4532 26.1868
NOD/ShiLtJ f 21.28 0.5773 22.4132 20.1468
NOD/ShiLtJ m 25.7846 0.5063 26.7785 24.7908
NON/ShiLtJ f 26.97 0.5773 28.1032 25.8368
NON/ShiLtJ m 32.63 0.5773 33.7632 31.4968
NZB/BlNJ f 22.53 0.5773 23.6632 21.3968
NZB/BlNJ m 27.8444 0.6085 29.0389 26.65
NZW/LacJ f 24.1917 0.527 25.2261 23.1572
NZW/LacJ m 29.3727 0.5504 30.4532 28.2923
P/J f 18.09 0.5773 19.2232 16.9568
P/J m 21.94 0.5773 23.0732 20.8068
PL/J f 17.35 0.5773 18.4832 16.2168
PL/J m 21.6765 0.4427 22.5456 20.8074
RBF/DnJ f 25.28 0.5773 26.4132 24.1468
RBF/DnJ m 28.5818 0.5504 29.6623 27.5014
RF/J f 28.15 0.5773 29.2832 27.0168
RF/J m 28.7 0.5504 29.7804 27.6196
RIIIS/J f 18.17 0.5773 19.3032 17.0368
RIIIS/J m 22.6667 0.527 23.7011 21.6322
SEA/GnJ f 20.4667 0.6085 21.6611 19.2722
SEA/GnJ m 23.64 0.5773 24.7732 22.5068
SJL/J f 19.27 0.5773 20.4032 18.1368
SJL/J m 22.54 0.5773 23.6732 21.4068
SM/J f 14.83 0.5773 15.9632 13.6968
SM/J m 18.5917 0.527 19.6261 17.5572
SWR/J f 16.78 0.5773 17.9132 15.6468
SWR/J m 21.9538 0.5063 22.9477 20.96


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 21.99 0.4082 22.7913 21.1887
A/J both 21.8586 0.3988 22.6415 21.0758
AKR/J both 30.2055 0.3988 30.9883 29.4226
BALB/cJ both 23.28 0.4082 24.0813 22.4787
BPH/2J both 18.86 0.4082 19.6613 18.0587
BPL/1J both 20.275 0.4082 21.0763 19.4737
BPN/3J both 22.125 0.4082 22.9263 21.3237
BTBR T+ Itpr3tf/J both 27.4094 0.3803 28.1559 26.6628
C3H/HeJ both 22.017 0.3457 22.6956 21.3383
C57BL/10J both 22.91 0.4082 23.7113 22.1087
C57BL/6J both 22.6025 0.2886 23.1691 22.0359
C57BLKS/J both 21.2803 0.2441 21.7594 20.8011
C57BR/cdJ both 22.31 0.4082 23.1113 21.5087
C57L/J both 22.34 0.4082 23.1413 21.5387
C58/J both 21.9095 0.3988 22.6924 21.1267
CAST/EiJ both 13.105 0.4082 13.9063 12.3037
CBA/J both 23.81 0.4082 24.6113 23.0087
CE/J both 24.8267 0.3726 25.5581 24.0952
DBA/1J both 20.625 0.4082 21.4263 19.8237
DBA/2J both 23.545 0.4082 24.3463 22.7437
FVB/NJ both 22.7445 0.3566 23.4445 22.0445
I/LnJ both 21.105 0.4082 21.9063 20.3037
KK/HlJ both 29.0787 0.3566 29.7787 28.3787
LP/J both 23.215 0.4082 24.0163 22.4137
NOD/ShiLtJ both 23.5323 0.3839 24.2859 22.7787
NON/ShiLtJ both 29.8 0.4082 30.6013 28.9987
NZB/BlNJ both 25.1872 0.4194 26.0105 24.364
NZW/LacJ both 26.7822 0.381 27.5301 26.0343
P/J both 20.015 0.4082 20.8163 19.2137
PL/J both 19.5132 0.3638 20.2273 18.7992
RBF/DnJ both 26.9309 0.3988 27.7138 26.1481
RF/J both 28.425 0.3988 29.2079 27.6421
RIIIS/J both 20.4183 0.3908 21.1855 19.6512
SEA/GnJ both 22.0533 0.4194 22.8766 21.2301
SJL/J both 20.905 0.4082 21.7063 20.1037
SM/J both 16.7108 0.3908 17.478 15.9437
SWR/J both 19.3669 0.3839 20.1206 18.6133




  GWAS USING LINEAR MIXED MODELS