Project measure / variable:   Yuan1   bw_M18

ID, description, units MPD:27013   bw_M18   body weight   [g]  at age 18mo  
Data set, strains Yuan1   inbred   30 strains     sex: both     age: 78wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Yuan1 - body weight at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains27 strains
Mean of the strain means27.2   g 31.1   g
Median of the strain means25.3   g 29.3   g
SD of the strain means± 8.69 ± 8.41
Coefficient of variation (CV)0.319 0.270
Min–max range of strain means16.1   –   62.8   g 20.7   –   67.8   g
Mean sample size per strain6.1   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 474.5203 474.5203 28.7563 < 0.0001
strain 25 21098.7893 843.9516 51.144 < 0.0001
sex:strain 25 936.8846 37.4754 2.271 0.0007
Residuals 289 4768.9228 16.5015


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 26.8 2.75   7 1.04 0.103 23.4, 30.4 -0.05
129S1/SvImJ m 29.3 4.43   14 1.18 0.151 20.1, 35.3 -0.21
A/J f 26.0 2.23   7 0.844 0.0857 24.6, 31.0 -0.14
A/J m 28.0 4.6   5 2.06 0.164 21.1, 33.9 -0.37
BALB/cByJ f 27.3 2.93   8 1.04 0.107 23.7, 31.7 0.01
BALB/cByJ m 24.2 3.05   5 1.37 0.126 19.4, 26.3 -0.82
BTBR T+ Itpr3tf/J f 36.2 1.22   4 0.612 0.0337 34.5, 37.3 1.03
BTBR T+ Itpr3tf/J m 34.9 2.55   6 1.04 0.0732 30.3, 37.1 0.45
BUB/BnJ f 25.9 1.99   11 0.601 0.077 22.6, 29.0 -0.15
BUB/BnJ m 31.6 1.53   6 0.625 0.0484 29.9, 33.9 0.06
C3H/HeJ f 23.7 3.18   8 1.13 0.135 20.9, 30.4 -0.41
C3H/HeJ m 28.6 1.63   8 0.575 0.0568 26.4, 31.0 -0.3
C57BL/10J f 23.2 3.54   7 1.34 0.153 18.2, 26.6 -0.46
C57BL/10J m 27.7 3.97   7 1.5 0.143 22.6, 33.1 -0.4
C57BL/6J f 27.8 3.95   7 1.49 0.142 22.2, 34.9 0.07
C57BL/6J m 31.7 1.48   8 0.524 0.0467 29.8, 34.1 0.07
C57BLKS/J f 22.7 1.59   7 0.601 0.07 20.9, 24.8 -0.52
C57BLKS/J m 29.3 2.66   8 0.94 0.0909 25.5, 32.8 -0.21
C57BR/cdJ f 28.6 2.56   8 0.906 0.0897 25.6, 33.2 0.16
C57BR/cdJ m 36.1 4.67   8 1.65 0.129 26.7, 40.3 0.59
C57L/J f 28.6 2.32   7 0.879 0.0812 25.7, 32.6 0.16
C57L/J m 33.4 2.89   6 1.18 0.0864 30.7, 38.4 0.27
CAST/EiJ f 16.1 2.34   3 1.35 0.145 14.4, 18.8 -1.28
CBA/J f 36.4 6.42   9 2.14 0.176 27.0, 45.6 1.06
CBA/J m 30.1 2.73   6 1.11 0.0905 25.6, 33.8 -0.12
DBA/2J f 24.9 2.68   5 1.2 0.108 21.6, 27.9 -0.27
DBA/2J m 28.5 4.07   6 1.66 0.143 23.6, 34.4 -0.31
FVB/NJ f 29.1 3.36   7 1.27 0.116 25.0, 33.3 0.22
FVB/NJ m 29.1 5.88   4 2.94 0.202 22.2, 34.7 -0.24
KK/HlJ f 23.6 1.41   4 0.705 0.0597 21.9, 25.3 -0.42
KK/HlJ m 29.0 4.76   7 1.8 0.164 24.3, 36.6 -0.25
LP/J f 22.9 1.58   7 0.595 0.0687 21.1, 24.9 -0.5
LP/J m 28.0 1.74   8 0.617 0.0623 24.3, 30.1 -0.37
MRL/MpJ f 25.3 4.01   5 1.79 0.159 19.7, 30.7 -0.22
MRL/MpJ m 30.1 6.29   7 2.38 0.209 24.9, 42.7 -0.12
NOD.B10Sn-H2b/J m 34.7 2.26   2   1.6 0.0652 33.1, 36.3 0.43
NON/ShiLtJ f 30.7 5.85   6 2.39 0.191 21.1, 39.0 0.4
NON/ShiLtJ m 32.4 8.21   7 3.1 0.253 25.0, 48.0 0.15
NZO/HlLtJ f 62.8 7.56   7 2.86 0.12 52.1, 71.7 4.09
NZO/HlLtJ m 67.8 13.1   5 5.84 0.193 46.2, 79.8 4.37
NZW/LacJ f 41.4 4.72   7 1.78 0.114 33.8, 48.1 1.63
NZW/LacJ m 40.2 3.62   6 1.48 0.09 35.1, 43.7 1.08
P/J f 24.4 0.551   4 0.275 0.0225 23.8, 25.0 -0.32
PL/J f 19.9 1.34   2   0.95 0.0673 19.0, 20.9 -0.84
PWD/PhJ f 23.5 2.11   4 1.06 0.09 21.2, 26.0 -0.43
PWD/PhJ m 23.5 2.86   7 1.08 0.121 20.4, 27.2 -0.9
RIIIS/J f 22.5 3.99   8 1.41 0.177 17.0, 28.5 -0.54
RIIIS/J m 30.2 3.01   8 1.06 0.0997 23.9, 33.7 -0.11
SJL/J f 21.4 3.73   4 1.87 0.174 16.2, 24.4 -0.67
SJL/J m 23.3 3.41   4 1.71 0.146 18.3, 25.9 -0.93
SM/J f 27.3 2.3   6 0.941 0.0844 24.4, 30.3 0.01
SM/J m 28.7 4.15   9 1.38 0.145 24.0, 38.9 -0.29
SWR/J f 23.0 2.2   4 1.1 0.0958 20.2, 25.0 -0.49
SWR/J m 28.6 0.876   4 0.438 0.0306 27.8, 29.5 -0.3
WSB/EiJ f 17.4 2.23   4 1.12 0.128 15.5, 20.3 -1.13
WSB/EiJ m 20.7 2.8   4 1.4 0.135 18.0, 23.7 -1.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 26.7571 1.5354 29.7791 23.7352
129S1/SvImJ m 29.2929 1.0857 31.4297 27.156
A/J f 26.0429 1.5354 29.0648 23.0209
A/J m 28.0 1.8167 31.5756 24.4244
BALB/cByJ f 27.3 1.4362 30.1267 24.4733
BALB/cByJ m 24.24 1.8167 27.8156 20.6644
BTBR T+ Itpr3tf/J f 36.25 2.0311 40.2476 32.2524
BTBR T+ Itpr3tf/J m 34.8667 1.6584 38.1307 31.6026
BUB/BnJ f 25.8727 1.2248 28.2834 23.4621
BUB/BnJ m 31.6167 1.6584 34.8807 28.3526
C3H/HeJ f 23.6625 1.4362 26.4892 20.8358
C3H/HeJ m 28.6375 1.4362 31.4642 25.8108
C57BL/10J f 23.1857 1.5354 26.2076 20.1638
C57BL/10J m 27.6714 1.5354 30.6933 24.6495
C57BL/6J f 27.8143 1.5354 30.8362 24.7924
C57BL/6J m 31.725 1.4362 34.5517 28.8983
C57BLKS/J f 22.7286 1.5354 25.7505 19.7067
C57BLKS/J m 29.2625 1.4362 32.0892 26.4358
C57BR/cdJ f 28.5875 1.4362 31.4142 25.7608
C57BR/cdJ m 36.1375 1.4362 38.9642 33.3108
C57L/J f 28.6429 1.5354 31.6648 25.6209
C57L/J m 33.4333 1.6584 36.6974 30.1693
CBA/J f 36.3778 1.3541 39.0429 33.7127
CBA/J m 30.1333 1.6584 33.3974 26.8693
DBA/2J f 24.9 1.8167 28.4756 21.3244
DBA/2J m 28.45 1.6584 31.714 25.186
FVB/NJ f 29.0571 1.5354 32.0791 26.0352
FVB/NJ m 29.15 2.0311 33.1476 25.1524
KK/HlJ f 23.6 2.0311 27.5976 19.6024
KK/HlJ m 28.9857 1.5354 32.0076 25.9638
LP/J f 22.9143 1.5354 25.9362 19.8924
LP/J m 28.0125 1.4362 30.8392 25.1858
MRL/MpJ f 25.28 1.8167 28.8556 21.7044
MRL/MpJ m 30.1143 1.5354 33.1362 27.0924
NON/ShiLtJ f 30.6667 1.6584 33.9307 27.4026
NON/ShiLtJ m 32.3857 1.5354 35.4076 29.3638
NZO/HlLtJ f 62.8286 1.5354 65.8505 59.8067
NZO/HlLtJ m 67.78 1.8167 71.3556 64.2044
NZW/LacJ f 41.4429 1.5354 44.4648 38.4209
NZW/LacJ m 40.2167 1.6584 43.4807 36.9526
PWD/PhJ f 23.475 2.0311 27.4726 19.4774
PWD/PhJ m 23.5286 1.5354 26.5505 20.5067
RIIIS/J f 22.5375 1.4362 25.3642 19.7108
RIIIS/J m 30.1875 1.4362 33.0142 27.3608
SJL/J f 21.425 2.0311 25.4226 17.4274
SJL/J m 23.325 2.0311 27.3226 19.3274
SM/J f 27.3167 1.6584 30.5807 24.0526
SM/J m 28.7222 1.3541 31.3873 26.0571
SWR/J f 23.0 2.0311 26.9976 19.0024
SWR/J m 28.6 2.0311 32.5976 24.6024
WSB/EiJ f 17.4 2.0311 21.3976 13.4024
WSB/EiJ m 20.725 2.0311 24.7226 16.7274


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 28.025 0.9402 29.8755 26.1745
A/J both 27.0214 1.1893 29.3622 24.6807
BALB/cByJ both 25.77 1.1579 28.049 23.491
BTBR T+ Itpr3tf/J both 35.5583 1.3111 38.1388 32.9779
BUB/BnJ both 28.7447 1.0308 30.7736 26.7158
C3H/HeJ both 26.15 1.0155 28.1488 24.1512
C57BL/10J both 25.4286 1.0857 27.5654 23.2918
C57BL/6J both 29.7696 1.0512 31.8386 27.7007
C57BLKS/J both 25.9955 1.0512 28.0645 23.9266
C57BR/cdJ both 32.3625 1.0155 34.3613 30.3637
C57L/J both 31.0381 1.13 33.2622 28.814
CBA/J both 33.2556 1.0705 35.3625 31.1486
DBA/2J both 26.675 1.2299 29.0957 24.2543
FVB/NJ both 29.1036 1.2731 31.6092 26.5979
KK/HlJ both 26.2929 1.2731 28.7985 23.7872
LP/J both 25.4634 1.0512 27.5324 23.3944
MRL/MpJ both 27.6971 1.1893 30.0379 25.3564
NON/ShiLtJ both 31.5262 1.13 33.7503 29.3021
NZO/HlLtJ both 65.3043 1.1893 67.6451 62.9635
NZW/LacJ both 40.8298 1.13 43.0538 38.6057
PWD/PhJ both 23.5018 1.2731 26.0074 20.9961
RIIIS/J both 26.3625 1.0155 28.3613 24.3637
SJL/J both 22.375 1.4362 25.2017 19.5483
SM/J both 28.0194 1.0705 30.1264 25.9125
SWR/J both 25.8 1.4362 28.6267 22.9733
WSB/EiJ both 19.0625 1.4362 21.8892 16.2358




  GWAS USING LINEAR MIXED MODELS