Project measure / variable:   Ackert1   LTM_M06

ID, description, units MPD:25046   LTM_M06   weight of lean tissue mass, head excluded   [g]  at age 6mo  
Data set, strains Ackert1   inbred   32 strains     sex: both     age: 26wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Ackert1 - weight of lean tissue mass, head excluded at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested31 strains30 strains
Mean of the strain means17.9   g 21.9   g
Median of the strain means17.5   g 22.1   g
SD of the strain means± 4.70 ± 5.15
Coefficient of variation (CV)0.262 0.236
Min–max range of strain means10.0   –   31.6   g 11.4   –   36.3   g
Mean sample size per strain7.0   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1710.3684 1710.3684 554.3048 < 0.0001
strain 30 8258.9404 275.298 89.22 < 0.0001
sex:strain 30 181.8952 6.0632 1.965 0.0023
Residuals 343 1058.3641 3.0856


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 15.2 1.5   8 0.531 0.0986 13.1, 18.0 -0.58
129S1/SvImJ m 20.7 1.38   7 0.523 0.0668 18.6, 22.7 -0.23
A/J f 17.4 1.9   8 0.673 0.109 14.5, 20.7 -0.12
A/J m 21.2 1.49   8 0.528 0.0705 18.8, 23.0 -0.13
AKR/J f 25.5 2.43   6 0.992 0.0954 21.0, 27.2 1.61
AKR/J m 29.0 0.844   5 0.378 0.0291 27.9, 30.2 1.39
BALB/cByJ f 18.0 1.96   6 0.799 0.109 15.4, 20.2 0.01
BALB/cByJ m 22.9 1.5   6 0.611 0.0653 20.2, 24.2 0.2
BTBR T+ Itpr3tf/J f 27.4 1.77   5 0.791 0.0646 25.9, 30.4 2.01
BTBR T+ Itpr3tf/J m 29.7 2.08   7 0.784 0.0698 27.6, 34.0 1.52
BUB/BnJ f 21.8 1.86   8 0.658 0.0854 19.5, 24.0 0.82
BUB/BnJ m 26.3 3.37   4 1.68 0.128 22.0, 30.1 0.86
C3H/HeJ f 16.9 0.952   8 0.336 0.0564 15.1, 18.3 -0.22
C3H/HeJ m 22.7 2.78   6 1.14 0.122 18.3, 25.1 0.16
C57BL/10J f 18.7 1.27   8 0.448 0.0677 17.1, 20.8 0.16
C57BL/10J m 22.7 0.969   6 0.396 0.0427 21.8, 24.0 0.16
C57BL/6J f 17.4 1.0   8 0.354 0.0576 15.5, 18.6 -0.12
C57BL/6J m 23.5 0.952   8 0.336 0.0406 22.4, 25.1 0.32
C57BLKS/J f 16.5 1.46   8 0.515 0.0882 13.5, 18.2 -0.31
C57BLKS/J m 20.9 0.917   8 0.324 0.0439 19.3, 22.0 -0.19
C57BR/cdJ f 18.0 0.741   7 0.28 0.0413 16.8, 19.0 0.01
C57BR/cdJ m 20.1 5.46   6 2.23 0.272 9.0, 22.9 -0.34
C57L/J f 18.3 1.18   7 0.444 0.0643 16.9, 20.2 0.07
C57L/J m 25.3 1.69   5 0.755 0.0667 24.1, 28.1 0.67
CAST/EiJ f 10.3 0.901   6 0.368 0.087 9.1, 11.4 -1.63
CAST/EiJ m 11.6 0.965   7 0.365 0.0833 10.0, 12.6 -1.99
CBA/J f 19.7 1.2   8 0.425 0.0609 17.5, 21.0 0.37
CBA/J m 24.8 1.81   4 0.907 0.0731 22.5, 26.9 0.57
DBA/2J f 19.2 1.6   5 0.716 0.0833 17.0, 20.9 0.27
DBA/2J m 22.8 1.98   7 0.748 0.0866 20.4, 26.8 0.18
FVB/NJ f 18.1 1.18   8 0.417 0.0654 15.5, 19.3 0.03
FVB/NJ m 22.5 4.1   6 1.67 0.182 14.6, 25.2 0.12
KK/HlJ f 17.6 1.86   4 0.928 0.105 16.1, 20.3 -0.07
KK/HlJ m 22.1 3.3   7 1.25 0.149 18.8, 27.9 0.05
LP/J f 14.6 1.26   6 0.513 0.0861 12.5, 16.4 -0.71
LP/J m 18.3 0.959   8 0.339 0.0525 17.0, 19.4 -0.69
MOLF/EiJ f 10.0 0.616   7 0.233 0.0613 8.8, 10.6 -1.69
MOLF/EiJ m 11.4 1.35   7 0.508 0.118 9.7, 13.8 -2.03
MRL/MpJ f 31.6 2.17   3 1.25 0.0685 30.3, 34.1 2.9
MRL/MpJ m 36.3 1.2   7 0.454 0.0331 34.2, 37.5 2.8
NOD.B10Sn-H2b/J f 23.4 1.61   8 0.569 0.0687 20.4, 25.3 1.16
NON/ShiLtJ f 20.9 1.36   8 0.48 0.0648 18.8, 22.2 0.63
NON/ShiLtJ m 24.4 1.95   7 0.737 0.0799 20.3, 26.5 0.49
NZW/LacJ f 21.8 1.05   8 0.37 0.048 20.5, 23.5 0.82
NZW/LacJ m 26.1 1.86   5 0.832 0.0713 23.9, 28.3 0.82
P/J f 15.7 0.763   6 0.312 0.0487 14.4, 16.4 -0.48
P/J m 19.6 3.68   6 1.5 0.187 12.7, 23.1 -0.44
PL/J f 15.0 1.58   8 0.557 0.105 13.6, 18.2 -0.63
PL/J m 19.3 0.888   8 0.314 0.0459 17.8, 20.7 -0.5
PWD/PhJ f 11.4 0.798   5 0.357 0.0701 10.5, 12.6 -1.39
PWD/PhJ m 13.9 1.12   4 0.56 0.0805 12.3, 14.9 -1.54
RIIIS/J f 13.8 0.739   8 0.261 0.0534 13.0, 15.1 -0.88
RIIIS/J m 18.4 1.28   6 0.521 0.0694 16.5, 20.4 -0.67
SJL/J f 16.6 1.3   8 0.459 0.0783 15.0, 18.5 -0.29
SJL/J m 20.9 1.11   6 0.451 0.053 19.4, 21.9 -0.19
SM/J f 15.8 1.71   8 0.605 0.108 13.3, 17.7 -0.46
SM/J m 21.9 1.39   8 0.492 0.0634 19.3, 24.1 0.01
SWR/J f 17.5 1.66   6 0.68 0.0951 15.5, 20.0 -0.1
SWR/J m 22.2 1.69   6 0.692 0.0762 19.5, 24.2 0.07
WSB/EiJ f 12.3 1.65   6 0.674 0.134 10.2, 15.0 -1.2
WSB/EiJ m 14.3 1.05   5 0.471 0.0734 13.2, 16.0 -1.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 15.2375 0.621 16.459 14.016
129S1/SvImJ m 20.7 0.6639 22.0059 19.3941
A/J f 17.4125 0.621 18.634 16.191
A/J m 21.1875 0.621 22.409 19.966
AKR/J f 25.4833 0.7171 26.8938 24.0728
AKR/J m 29.04 0.7856 30.5851 27.4949
BALB/cByJ f 18.0333 0.7171 19.4438 16.6228
BALB/cByJ m 22.9167 0.7171 24.3272 21.5062
BTBR T+ Itpr3tf/J f 27.38 0.7856 28.9251 25.8349
BTBR T+ Itpr3tf/J m 29.7429 0.6639 31.0487 28.437
BUB/BnJ f 21.8 0.621 23.0215 20.5785
BUB/BnJ m 26.275 0.8783 28.0025 24.5475
C3H/HeJ f 16.8625 0.621 18.084 15.641
C3H/HeJ m 22.7333 0.7171 24.1438 21.3228
C57BL/10J f 18.7375 0.621 19.959 17.516
C57BL/10J m 22.6667 0.7171 24.0772 21.2562
C57BL/6J f 17.3625 0.621 18.584 16.141
C57BL/6J m 23.4625 0.621 24.684 22.241
C57BLKS/J f 16.5125 0.621 17.734 15.291
C57BLKS/J m 20.8875 0.621 22.109 19.666
C57BR/cdJ f 17.9571 0.6639 19.263 16.6513
C57BR/cdJ m 20.1 0.7171 21.5105 18.6895
C57L/J f 18.2857 0.6639 19.5916 16.9798
C57L/J m 25.28 0.7856 26.8251 23.7349
CAST/EiJ f 10.35 0.7171 11.7605 8.9395
CAST/EiJ m 11.5857 0.6639 12.8916 10.2798
CBA/J f 19.725 0.621 20.9465 18.5035
CBA/J m 24.825 0.8783 26.5525 23.0975
DBA/2J f 19.2 0.7856 20.7451 17.6549
DBA/2J m 22.8429 0.6639 24.1487 21.537
FVB/NJ f 18.05 0.621 19.2715 16.8285
FVB/NJ m 22.4833 0.7171 23.8938 21.0728
KK/HlJ f 17.6 0.8783 19.3275 15.8725
KK/HlJ m 22.1429 0.6639 23.4487 20.837
LP/J f 14.6 0.7171 16.0105 13.1895
LP/J m 18.275 0.621 19.4965 17.0535
MOLF/EiJ f 10.0429 0.6639 11.3487 8.737
MOLF/EiJ m 11.4286 0.6639 12.7345 10.1227
MRL/MpJ f 31.6 1.0142 33.5948 29.6052
MRL/MpJ m 36.3286 0.6639 37.6345 35.0227
NOD.B10Sn-H2b/J f 23.4 0.621 24.6215 22.1785
NOD.B10Sn-H2b/J m 26.05 1.2421 28.4931 23.6069
NON/ShiLtJ f 20.95 0.621 22.1715 19.7285
NON/ShiLtJ m 24.4286 0.6639 25.7345 23.1227
NZW/LacJ f 21.7875 0.621 23.009 20.566
NZW/LacJ m 26.1 0.7856 27.6451 24.5549
P/J f 15.6667 0.7171 17.0772 14.2562
P/J m 19.65 0.7171 21.0605 18.2395
PL/J f 14.9875 0.621 16.209 13.766
PL/J m 19.325 0.621 20.5465 18.1035
PWD/PhJ f 11.38 0.7856 12.9251 9.8349
PWD/PhJ m 13.9 0.8783 15.6275 12.1725
RIIIS/J f 13.8375 0.621 15.059 12.616
RIIIS/J m 18.3833 0.7171 19.7938 16.9728
SJL/J f 16.5625 0.621 17.784 15.341
SJL/J m 20.8667 0.7171 22.2772 19.4562
SM/J f 15.825 0.621 17.0465 14.6035
SM/J m 21.95 0.621 23.1715 20.7285
SWR/J f 17.5 0.7171 18.9105 16.0895
SWR/J m 22.2167 0.7171 23.6272 20.8062
WSB/EiJ f 12.3167 0.7171 13.7272 10.9062
WSB/EiJ m 14.34 0.7856 15.8851 12.7949


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 17.9687 0.4546 18.8628 17.0747
A/J both 19.3 0.4391 20.1638 18.4362
AKR/J both 27.2617 0.5318 28.3077 26.2156
BALB/cByJ both 20.475 0.5071 21.4724 19.4776
BTBR T+ Itpr3tf/J both 28.5614 0.5143 29.573 27.5499
BUB/BnJ both 24.0375 0.5378 25.0954 22.9796
C3H/HeJ both 19.7979 0.4743 20.7309 18.8649
C57BL/10J both 20.7021 0.4743 21.6351 19.7691
C57BL/6J both 20.4125 0.4391 21.2763 19.5487
C57BLKS/J both 18.7 0.4391 19.5638 17.8362
C57BR/cdJ both 19.0286 0.4886 19.9897 18.0675
C57L/J both 21.7829 0.5143 22.7944 20.7713
CAST/EiJ both 10.9679 0.4886 11.929 10.0068
CBA/J both 22.275 0.5378 23.3329 21.2171
DBA/2J both 21.0214 0.5143 22.033 20.0099
FVB/NJ both 20.2667 0.4743 21.1996 19.3337
KK/HlJ both 19.8714 0.5505 20.9542 18.7886
LP/J both 16.4375 0.4743 17.3705 15.5045
MOLF/EiJ both 10.7357 0.4695 11.6591 9.8123
MRL/MpJ both 33.9643 0.6061 35.1564 32.7722
NOD.B10Sn-H2b/J both 24.725 0.6944 26.0907 23.3593
NON/ShiLtJ both 22.6893 0.4546 23.5834 21.7952
NZW/LacJ both 23.9437 0.5007 24.9286 22.9589
P/J both 17.6583 0.5071 18.6557 16.6609
PL/J both 17.1562 0.4391 18.02 16.2925
PWD/PhJ both 12.64 0.5892 13.7989 11.4811
RIIIS/J both 16.1104 0.4743 17.0434 15.1774
SJL/J both 18.7146 0.4743 19.6476 17.7816
SM/J both 18.8875 0.4391 19.7513 18.0237
SWR/J both 19.8583 0.5071 20.8557 18.8609
WSB/EiJ both 13.3283 0.5318 14.3744 12.2823




  GWAS USING LINEAR MIXED MODELS