Project measure / variable:   Yuan3   Phos_M12

ID, description, units MPD:24437   Phos_M12   phosphorus (serum P)   [mg/dL]  at age 12mo  
Data set, strains Yuan3   inbred   31 strains     sex: both     age: 52wks
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  STRAIN COMPARISON PLOT
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Yuan3 - phosphorus (serum P) at age 12mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested31 strains29 strains
Mean of the strain means6.04   mg/dL 6.62   mg/dL
Median of the strain means5.96   mg/dL 6.66   mg/dL
SD of the strain means± 1.09 ± 1.07
Coefficient of variation (CV)0.180 0.161
Min–max range of strain means3.66   –   8.15   mg/dL 4.42   –   9.15   mg/dL
Mean sample size per strain6.7   mice 6.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 43.7595 43.7595 38.5156 < 0.0001
strain 26 308.4077 11.8618 10.4404 < 0.0001
sex:strain 26 86.4134 3.3236 2.9253 < 0.0001
Residuals 314 356.7516 1.1362


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.66 0.676   8 0.239 0.185 2.6, 4.9 -2.19
129S1/SvImJ m 4.42 0.483   8 0.171 0.109 3.7, 5.2 -2.06
A/J f 5.34 0.78   5 0.349 0.146 4.4, 6.0 -0.64
A/J m 6.03 1.56   16 0.39 0.259 4.2, 10.0 -0.56
AKR/J f 5.2 0.566   2   0.4 0.109 4.8, 5.6 -0.77
AKR/J m 7.07 0.513   3 0.296 0.0726 6.5, 7.5 0.42
BALB/cByJ f 5.31 0.631   7 0.238 0.119 4.4, 6.3 -0.67
BALB/cByJ m 5.53 2.09   8 0.741 0.379 3.7, 9.8 -1.02
BTBR T+ Itpr3tf/J f 5.86 1.16   8 0.412 0.199 4.7, 8.0 -0.16
BTBR T+ Itpr3tf/J m 5.89 0.696   7 0.263 0.118 4.7, 6.6 -0.69
BUB/BnJ f 4.6 0.711   5 0.318 0.154 3.8, 5.4 -1.32
BUB/BnJ m 5.67 0.752   9 0.251 0.133 4.6, 7.0 -0.89
C3H/HeJ f 4.91 0.467   8 0.165 0.0951 3.9, 5.3 -1.04
C3H/HeJ m 6.12 0.402   6 0.164 0.0657 5.5, 6.6 -0.47
C57BL/10J f 6.64 0.573   8 0.203 0.0863 5.6, 7.3 0.55
C57BL/10J m 6.69 0.552   7 0.209 0.0826 6.0, 7.5 0.06
C57BL/6J f 6.77 0.684   8 0.242 0.101 5.2, 7.3 0.67
C57BL/6J m 6.86 0.641   8 0.227 0.0934 6.1, 7.9 0.22
C57BLKS/J f 5.5 0.763   8 0.27 0.139 4.5, 6.8 -0.49
C57BLKS/J m 5.9 0.689   8 0.243 0.117 5.2, 7.3 -0.68
C57BR/cdJ f 6.12 1.28   4 0.642 0.21 5.0, 7.9 0.08
C57BR/cdJ m 8.67 1.59   8 0.561 0.183 6.8, 12.0 1.92
C57L/J f 6.07 1.72   6 0.701 0.283 4.4, 9.4 0.03
C57L/J m 6.13 1.32   7 0.499 0.216 4.8, 8.6 -0.46
CAST/EiJ f 7.06 0.727   8 0.257 0.103 6.2, 8.5 0.94
CBA/J f 4.8 0.365   7 0.138 0.0761 4.3, 5.4 -1.14
CBA/J m 6.95 0.85   6 0.347 0.122 5.7, 8.0 0.31
DBA/2J f 5.47 1.44   4 0.718 0.262 3.4, 6.7 -0.52
DBA/2J m 7.68 1.42   5 0.634 0.185 6.8, 10.2 0.99
FVB/NJ f 7.77 1.13   8 0.399 0.145 6.8, 9.9 1.59
FVB/NJ m 7.2 1.86   7 0.704 0.259 4.5, 10.1 0.54
KK/HlJ f 6.22 0.489   8 0.173 0.0786 5.4, 7.0 0.17
KK/HlJ m 6.06 0.541   5 0.242 0.0893 5.3, 6.8 -0.53
LP/J f 5.39 0.948   7 0.358 0.176 3.9, 6.8 -0.6
LP/J m 5.43 0.603   3 0.348 0.111 4.8, 6.0 -1.12
MRL/MpJ f 4.58 0.41   8 0.145 0.0896 4.2, 5.3 -1.34
MRL/MpJ m 6.3 1.41   8 0.499 0.224 4.5, 9.2 -0.3
NOD.B10Sn-H2b/J f 6.15 0.75   6 0.306 0.122 5.2, 7.1 0.1
NOD.B10Sn-H2b/J m 7.72 0.87   6 0.355 0.113 6.5, 9.0 1.03
NON/ShiLtJ f 7.5 1.68   8 0.595 0.224 4.7, 9.7 1.35
NON/ShiLtJ m 8.1 1.34   7 0.505 0.165 6.9, 10.8 1.38
NZO/HlLtJ f 7.26 1.25   5 0.557 0.172 6.0, 9.1 1.12
NZO/HlLtJ m 7.27 0.763   6 0.312 0.105 6.5, 8.6 0.61
NZW/LacJ f 5.79 0.522   8 0.185 0.0902 5.3, 6.9 -0.23
NZW/LacJ m 5.88 0.781   8 0.276 0.133 4.7, 7.0 -0.7
P/J f 8.15 1.18   8 0.419 0.145 7.0, 10.4 1.94
PL/J f 6.5 0.0   1   0.0 0.0 6.5, 6.5 0.43
PL/J m 5.63 0.321   3 0.186 0.0571 5.4, 6.0 -0.93
PWD/PhJ f 5.51 1.12   8 0.395 0.203 3.4, 6.8 -0.49
PWD/PhJ m 6.66 1.14   8 0.401 0.17 5.2, 8.3 0.03
RIIIS/J f 5.96 1.29   8 0.455 0.216 4.2, 8.4 -0.07
RIIIS/J m 6.81 0.549   8 0.194 0.0806 6.0, 7.5 0.17
SJL/J f 7.65 0.635   6 0.259 0.083 6.8, 8.5 1.48
SJL/J m 5.32 0.741   4 0.371 0.139 4.5, 6.0 -1.22
SM/J f 5.29 1.02   7 0.385 0.193 3.8, 7.1 -0.69
SM/J m 7.84 1.26   8 0.447 0.161 5.9, 9.4 1.14
SWR/J f 7.8 1.26   5 0.565 0.162 7.0, 10.0 1.62
SWR/J m 9.15 1.68   4 0.841 0.184 7.3, 11.2 2.37
WSB/EiJ f 6.33 1.34   7 0.506 0.212 5.0, 8.7 0.27
WSB/EiJ m 7.1 0.0   1   0.0 0.0 7.1, 7.1 0.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.6625 0.3769 4.404 2.921
129S1/SvImJ m 4.425 0.3769 5.1665 3.6835
A/J f 5.34 0.4767 6.2779 4.4021
A/J m 6.025 0.2665 6.5493 5.5007
AKR/J f 5.2 0.7537 6.683 3.717
AKR/J m 7.0667 0.6154 8.2775 5.8558
BALB/cByJ f 5.3143 0.4029 6.107 4.5216
BALB/cByJ m 5.525 0.3769 6.2665 4.7835
BTBR T+ Itpr3tf/J f 5.8625 0.3769 6.604 5.121
BTBR T+ Itpr3tf/J m 5.8857 0.4029 6.6784 5.093
BUB/BnJ f 4.6 0.4767 5.5379 3.6621
BUB/BnJ m 5.6667 0.3553 6.3657 4.9676
C3H/HeJ f 4.9125 0.3769 5.654 4.171
C3H/HeJ m 6.1167 0.4352 6.9729 5.2605
C57BL/10J f 6.6375 0.3769 7.379 5.896
C57BL/10J m 6.6857 0.4029 7.4784 5.893
C57BL/6J f 6.775 0.3769 7.5165 6.0335
C57BL/6J m 6.8625 0.3769 7.604 6.121
C57BLKS/J f 5.5 0.3769 6.2415 4.7585
C57BLKS/J m 5.9 0.3769 6.6415 5.1585
C57BR/cdJ f 6.125 0.533 7.1736 5.0764
C57BR/cdJ m 8.675 0.3769 9.4165 7.9335
C57L/J f 6.0667 0.4352 6.9229 5.2105
C57L/J m 6.1286 0.4029 6.9212 5.3359
CBA/J f 4.8 0.4029 5.5927 4.0073
CBA/J m 6.95 0.4352 7.8062 6.0938
DBA/2J f 5.475 0.533 6.5236 4.4264
DBA/2J m 7.68 0.4767 8.6179 6.7421
FVB/NJ f 7.775 0.3769 8.5165 7.0335
FVB/NJ m 7.2 0.4029 7.9927 6.4073
KK/HlJ f 6.225 0.3769 6.9665 5.4835
KK/HlJ m 6.06 0.4767 6.9979 5.1221
LP/J f 5.3857 0.4029 6.1784 4.593
LP/J m 5.4333 0.6154 6.6442 4.2225
MRL/MpJ f 4.575 0.3769 5.3165 3.8335
MRL/MpJ m 6.3 0.3769 7.0415 5.5585
NOD.B10Sn-H2b/J f 6.15 0.4352 7.0062 5.2938
NOD.B10Sn-H2b/J m 7.7167 0.4352 8.5729 6.8605
NON/ShiLtJ f 7.5 0.3769 8.2415 6.7585
NON/ShiLtJ m 8.1 0.4029 8.8927 7.3073
NZO/HlLtJ f 7.26 0.4767 8.1979 6.3221
NZO/HlLtJ m 7.2667 0.4352 8.1229 6.4105
NZW/LacJ f 5.7875 0.3769 6.529 5.046
NZW/LacJ m 5.875 0.3769 6.6165 5.1335
PWD/PhJ f 5.5125 0.3769 6.254 4.771
PWD/PhJ m 6.6625 0.3769 7.404 5.921
RIIIS/J f 5.9625 0.3769 6.704 5.221
RIIIS/J m 6.8125 0.3769 7.554 6.071
SJL/J f 7.65 0.4352 8.5062 6.7938
SJL/J m 5.325 0.533 6.3736 4.2764
SM/J f 5.2857 0.4029 6.0784 4.493
SM/J m 7.8375 0.3769 8.579 7.096
SWR/J f 7.8 0.4767 8.7379 6.8621
SWR/J m 9.15 0.533 10.1986 8.1014


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 4.0437 0.2665 4.5681 3.5194
A/J both 5.6825 0.2731 6.2198 5.1452
AKR/J both 6.1333 0.4865 7.0906 5.1761
BALB/cByJ both 5.4196 0.2758 5.9623 4.8769
BTBR T+ Itpr3tf/J both 5.8741 0.2758 6.4168 5.3314
BUB/BnJ both 5.1333 0.2973 5.7182 4.5484
C3H/HeJ both 5.5146 0.2878 6.0809 4.9483
C57BL/10J both 6.6616 0.2758 7.2043 6.1189
C57BL/6J both 6.8188 0.2665 7.3431 6.2944
C57BLKS/J both 5.7 0.2665 6.2243 5.1757
C57BR/cdJ both 7.4 0.3264 8.0421 6.7579
C57L/J both 6.0976 0.2965 6.681 5.5142
CBA/J both 5.875 0.2965 6.4584 5.2916
DBA/2J both 6.5775 0.3575 7.2809 5.8741
FVB/NJ both 7.4875 0.2758 8.0302 6.9448
KK/HlJ both 6.1425 0.3038 6.7403 5.5447
LP/J both 5.4095 0.3678 6.1331 4.6859
MRL/MpJ both 5.4375 0.2665 5.9618 4.9132
NOD.B10Sn-H2b/J both 6.9333 0.3077 7.5387 6.3279
NON/ShiLtJ both 7.8 0.2758 8.3427 7.2573
NZO/HlLtJ both 7.2633 0.3227 7.8983 6.6284
NZW/LacJ both 5.8312 0.2665 6.3556 5.3069
PWD/PhJ both 6.0875 0.2665 6.6118 5.5632
RIIIS/J both 6.3875 0.2665 6.9118 5.8632
SJL/J both 6.4875 0.344 7.1644 5.8106
SM/J both 6.5616 0.2758 7.1043 6.0189
SWR/J both 8.475 0.3575 9.1784 7.7716




  GWAS USING LINEAR MIXED MODELS