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Project measure / variable:   Yuan3   Phos_M06

ID, description, units MPD:24436   Phos_M06   phosphorus (serum P)   [mg/dL]  at age 6mo  
Data set, strains Yuan3   inbred   30 strains     sex: both     age: 26wks
Procedure metabolic panel
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  STRAIN COMPARISON PLOT
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Yuan3 - phosphorus (serum P) at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains25 strains
Mean of the strain means6.87   mg/dL 7.38   mg/dL
Median of the strain means6.97   mg/dL 7.23   mg/dL
SD of the strain means± 0.985 ± 1.31
Coefficient of variation (CV)0.143 0.177
Min–max range of strain means4.36   –   8.56   mg/dL 5.14   –   9.69   mg/dL
Mean sample size per strain7.8   mice 7.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 16.9415 16.9415 14.0311 0.0002
strain 22 311.5074 14.1594 11.727 < 0.0001
sex:strain 22 190.2421 8.6474 7.1618 < 0.0001
Residuals 313 377.9234 1.2074


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.45 0.698   6 0.285 0.128 4.3, 6.2 -1.45
129S1/SvImJ m 5.14 0.535   7 0.202 0.104 4.5, 6.2 -1.71
A/J f 6.9 0.926   15 0.239 0.134 5.1, 8.0 0.03
A/J m 9.06 0.88   8 0.311 0.0971 7.8, 10.6 1.29
BALB/cByJ f 5.91 0.631   8 0.223 0.107 5.1, 6.8 -0.98
BALB/cByJ m 5.41 0.519   8 0.184 0.096 4.4, 6.1 -1.51
BTBR T+ Itpr3tf/J f 6.72 0.512   4 0.256 0.0762 6.2, 7.3 -0.16
BTBR T+ Itpr3tf/J m 7.85 1.33   8 0.471 0.17 6.2, 9.8 0.36
BUB/BnJ f 5.73 0.745   6 0.304 0.13 4.8, 6.9 -1.16
BUB/BnJ m 8.32 1.5   6 0.611 0.18 6.8, 9.9 0.72
C3H/HeJ f 6.65 0.665   8 0.235 0.1 5.6, 7.5 -0.23
C3H/HeJ m 8.09 0.76   7 0.287 0.094 7.1, 9.0 0.55
C57BL/10J f 8.39 1.16   8 0.409 0.138 7.0, 10.9 1.54
C57BL/10J m 8.43 0.862   7 0.326 0.102 7.2, 9.8 0.81
C57BL/6J f 7.24 1.03   8 0.364 0.142 5.8, 8.7 0.37
C57BL/6J m 7.02 0.435   4 0.217 0.0619 6.4, 7.4 -0.27
C57BLKS/J f 6.26 0.868   8 0.307 0.139 5.3, 7.6 -0.62
C57BLKS/J m 5.98 0.512   8 0.181 0.0857 5.1, 6.6 -1.07
C57BR/cdJ m 8.8 0.707   4 0.354 0.0804 8.0, 9.7 1.09
C57L/J f 7.11 0.785   8 0.277 0.11 6.0, 8.6 0.24
C57L/J m 8.35 1.29   8 0.457 0.155 6.9, 10.2 0.74
CAST/EiJ f 7.12 0.386   4 0.193 0.0542 6.7, 7.5 0.25
CBA/J f 7.7 0.874   6 0.357 0.114 6.7, 9.1 0.84
DBA/2J f 7.6 1.14   8 0.404 0.15 5.8, 9.6 0.74
DBA/2J m 9.62 1.29   13 0.358 0.134 7.7, 12.0 1.72
FVB/NJ f 7.94 1.23   14 0.329 0.155 6.1, 10.8 1.08
FVB/NJ m 7.1 1.25   9 0.416 0.176 5.7, 9.6 -0.21
KK/HlJ f 7.26 1.0   8 0.354 0.138 5.6, 9.0 0.39
LP/J f 4.36 0.646   8 0.228 0.148 3.4, 5.5 -2.55
LP/J m 6.91 0.77   8 0.272 0.111 5.8, 8.0 -0.36
MOLF/EiJ f 6.3 0.759   7 0.287 0.121 4.9, 7.1 -0.58
MOLF/EiJ m 6.87 1.03   7 0.391 0.15 5.9, 9.0 -0.39
MRL/MpJ m 7.23 1.09   8 0.385 0.151 5.9, 9.3 -0.11
NOD.B10Sn-H2b/J f 7.04 0.568   9 0.189 0.0807 5.9, 7.8 0.17
NOD.B10Sn-H2b/J m 7.8 0.534   5 0.239 0.0684 7.0, 8.4 0.32
NON/ShiLtJ f 6.47 0.611   8 0.216 0.0944 5.3, 7.0 -0.41
NON/ShiLtJ m 9.69 1.93   7 0.73 0.199 6.4, 11.9 1.77
NZO/HlLtJ f 8.56 1.53   8 0.542 0.179 7.2, 11.6 1.71
NZO/HlLtJ m 8.02 1.53   6 0.624 0.191 5.8, 9.6 0.49
NZW/LacJ f 5.94 1.5   8 0.53 0.253 4.4, 8.7 -0.95
P/J f 8.55 1.25   8 0.44 0.146 6.8, 10.0 1.7
P/J m 6.93 0.807   8 0.285 0.116 6.1, 8.1 -0.34
PL/J f 7.92 1.82   9 0.605 0.229 5.9, 11.9 1.06
PL/J m 6.96 1.62   9 0.539 0.233 5.0, 9.2 -0.32
PWD/PhJ f 7.09 1.4   8 0.494 0.197 5.6, 9.1 0.22
PWD/PhJ m 6.46 0.768   7 0.29 0.119 5.6, 7.3 -0.7
RIIIS/J f 7.52 1.81   6 0.74 0.241 5.8, 10.7 0.66
RIIIS/J m 5.4 0.984   8 0.348 0.182 4.4, 7.1 -1.51
SJL/J f 6.29 0.69   8 0.244 0.11 5.4, 7.4 -0.59
SM/J f 5.83 0.91   8 0.322 0.156 4.9, 7.5 -1.06
SM/J m 7.77 1.25   7 0.471 0.16 6.1, 9.6 0.3
WSB/EiJ f 6.63 1.4   8 0.496 0.212 5.2, 8.6 -0.25
WSB/EiJ m 5.22 1.08   6 0.44 0.207 3.7, 6.7 -1.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.45 0.4486 6.3326 4.5674
129S1/SvImJ m 5.1429 0.4153 5.96 4.3257
A/J f 6.9 0.2837 7.4582 6.3418
A/J m 9.0625 0.3885 9.8269 8.2981
BALB/cByJ f 5.9125 0.3885 6.6769 5.1481
BALB/cByJ m 5.4125 0.3885 6.1769 4.6481
BTBR T+ Itpr3tf/J f 6.725 0.5494 7.806 5.644
BTBR T+ Itpr3tf/J m 7.85 0.3885 8.6144 7.0856
BUB/BnJ f 5.7333 0.4486 6.616 4.8507
BUB/BnJ m 8.3167 0.4486 9.1993 7.434
C3H/HeJ f 6.65 0.3885 7.4144 5.8856
C3H/HeJ m 8.0857 0.4153 8.9029 7.2685
C57BL/10J f 8.3875 0.3885 9.1519 7.6231
C57BL/10J m 8.4286 0.4153 9.2457 7.6114
C57BL/6J f 7.2375 0.3885 8.0019 6.4731
C57BL/6J m 7.025 0.5494 8.106 5.944
C57BLKS/J f 6.2625 0.3885 7.0269 5.4981
C57BLKS/J m 5.975 0.3885 6.7394 5.2106
C57L/J f 7.1125 0.3885 7.8769 6.3481
C57L/J m 8.35 0.3885 9.1144 7.5856
DBA/2J f 7.6 0.3885 8.3644 6.8356
DBA/2J m 9.6154 0.3048 10.215 9.0157
FVB/NJ f 7.9429 0.2937 8.5207 7.365
FVB/NJ m 7.1 0.3663 7.8207 6.3793
LP/J f 4.3625 0.3885 5.1269 3.5981
LP/J m 6.9125 0.3885 7.6769 6.1481
MOLF/EiJ f 6.3 0.4153 7.1172 5.4828
MOLF/EiJ m 6.8714 0.4153 7.6886 6.0543
NOD.B10Sn-H2b/J f 7.0444 0.3663 7.7651 6.3238
NOD.B10Sn-H2b/J m 7.8 0.4914 8.7669 6.8331
NON/ShiLtJ f 6.475 0.3885 7.2394 5.7106
NON/ShiLtJ m 9.6857 0.4153 10.5029 8.8685
NZO/HlLtJ f 8.5625 0.3885 9.3269 7.7981
NZO/HlLtJ m 8.0167 0.4486 8.8993 7.134
P/J f 8.55 0.3885 9.3144 7.7856
P/J m 6.925 0.3885 7.6894 6.1606
PL/J f 7.9222 0.3663 8.6429 7.2015
PL/J m 6.9556 0.3663 7.6762 6.2349
PWD/PhJ f 7.0875 0.3885 7.8519 6.3231
PWD/PhJ m 6.4571 0.4153 7.2743 5.64
RIIIS/J f 7.5167 0.4486 8.3993 6.634
RIIIS/J m 5.4 0.3885 6.1644 4.6356
SM/J f 5.825 0.3885 6.5894 5.0606
SM/J m 7.7714 0.4153 8.5886 6.9543
WSB/EiJ f 6.625 0.3885 7.3894 5.8606
WSB/EiJ m 5.2167 0.4486 6.0993 4.334


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.2964 0.3057 5.8978 4.695
A/J both 7.9813 0.2405 8.4545 7.508
BALB/cByJ both 5.6625 0.2747 6.203 5.122
BTBR T+ Itpr3tf/J both 7.2875 0.3364 7.9495 6.6255
BUB/BnJ both 7.025 0.3172 7.6491 6.4009
C3H/HeJ both 7.3679 0.2843 7.9273 6.8084
C57BL/10J both 8.408 0.2843 8.9675 7.8486
C57BL/6J both 7.1313 0.3364 7.7932 6.4693
C57BLKS/J both 6.1188 0.2747 6.6593 5.5782
C57L/J both 7.7313 0.2747 8.2718 7.1907
DBA/2J both 8.6077 0.2469 9.0935 8.1219
FVB/NJ both 7.5214 0.2347 7.9833 7.0596
LP/J both 5.6375 0.2747 6.178 5.097
MOLF/EiJ both 6.5857 0.2937 7.1635 6.0079
NOD.B10Sn-H2b/J both 7.4222 0.3064 8.0252 6.8193
NON/ShiLtJ both 8.0804 0.2843 8.6398 7.5209
NZO/HlLtJ both 8.2896 0.2967 8.8734 7.7058
P/J both 7.7375 0.2747 8.278 7.197
PL/J both 7.4389 0.259 7.9485 6.9293
PWD/PhJ both 6.7723 0.2843 7.3318 6.2128
RIIIS/J both 6.4583 0.2967 7.0421 5.8745
SM/J both 6.7982 0.2843 7.3577 6.2387
WSB/EiJ both 5.9208 0.2967 6.5046 5.337




  GWAS USING LINEAR MIXED MODELS