Project measure / variable:   Yuan3   Ca_M18

ID, description, units MPD:24418   Ca_M18   calcium (serum Ca)   [mg/dL]  at age 18mo  
Data set, strains Yuan3   inbred   29 strains     sex: both     age: 78wks
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  STRAIN COMPARISON PLOT
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Yuan3 - calcium (serum Ca) at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains26 strains
Mean of the strain means9.72   mg/dL 9.69   mg/dL
Median of the strain means9.72   mg/dL 9.43   mg/dL
SD of the strain means± 0.560 ± 0.623
Coefficient of variation (CV)0.0577 0.0643
Min–max range of strain means8.59   –   11.5   mg/dL 8.97   –   11.6   mg/dL
Mean sample size per strain6.7   mice 5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1258 0.1258 0.5579 0.4558
strain 25 82.3292 3.2932 14.6095 < 0.0001
sex:strain 25 26.9116 1.0765 4.7755 < 0.0001
Residuals 268 60.4108 0.2254


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 9.84 0.331   7 0.125 0.0336 9.4, 10.5 0.22
129S1/SvImJ m 9.42 0.306   6 0.125 0.0325 9.0, 9.8 -0.44
A/J f 9.4 0.451   7 0.17 0.048 9.0, 10.3 -0.57
A/J m 9.07 0.359   4 0.18 0.0396 8.6, 9.4 -1.0
BALB/cByJ f 9.2 0.163   7 0.0617 0.0177 8.9, 9.4 -0.92
BALB/cByJ m 8.97 0.306   3 0.176 0.0341 8.7, 9.3 -1.16
BTBR T+ Itpr3tf/J f 10.1 0.565   6 0.231 0.0562 9.0, 10.7 0.68
BTBR T+ Itpr3tf/J m 9.82 0.179   5 0.08 0.0182 9.6, 10.0 0.2
BUB/BnJ f 9.6 0.589   4 0.294 0.0613 9.0, 10.4 -0.21
C3H/HeJ f 11.5 1.25   6 0.511 0.109 10.6, 13.9 3.18
C3H/HeJ m 10.4 0.219   7 0.0829 0.0211 10.1, 10.7 1.13
C57BL/10J f 9.63 0.502   7 0.19 0.0522 8.9, 10.4 -0.16
C57BL/10J m 9.84 0.351   5 0.157 0.0356 9.4, 10.3 0.23
C57BL/6J f 10.2 0.283   8 0.0999 0.0276 9.7, 10.5 0.86
C57BL/6J m 10.6 0.538   7 0.203 0.0506 9.6, 11.4 1.45
C57BLKS/J f 8.98 0.331   6 0.135 0.0369 8.5, 9.4 -1.32
C57BLKS/J m 9.64 0.172   7 0.0649 0.0178 9.3, 9.8 -0.09
C57BR/cdJ f 9.59 0.554   8 0.196 0.0578 8.6, 10.5 -0.23
C57BR/cdJ m 9.01 0.476   8 0.168 0.0529 8.3, 9.7 -1.1
C57L/J f 9.72 0.456   8 0.161 0.0469 9.0, 10.4 0.0
C57L/J m 9.34 0.114   5 0.051 0.0122 9.2, 9.5 -0.57
CBA/J f 9.9 0.245   8 0.0866 0.0247 9.4, 10.2 0.32
CBA/J m 9.38 0.264   6 0.108 0.0281 8.9, 9.6 -0.5
DBA/2J f 9.48 0.602   5 0.269 0.0635 8.9, 10.3 -0.42
DBA/2J m 10.1 0.368   7 0.139 0.0366 9.6, 10.8 0.65
FVB/NJ f 9.91 0.204   7 0.0769 0.0205 9.6, 10.2 0.34
KK/HlJ f 8.59 0.601   9 0.2 0.07 7.4, 9.3 -2.01
KK/HlJ m 9.99 0.669   7 0.253 0.067 9.0, 10.7 0.47
LP/J f 10.0 0.322   6 0.132 0.0322 9.4, 10.3 0.5
LP/J m 10.2 0.346   7 0.131 0.0338 9.8, 10.8 0.81
MRL/MpJ f 10.3 0.212   2   0.15 0.0205 10.2, 10.5 1.04
MRL/MpJ m 11.6 0.61   5 0.273 0.0527 10.9, 12.4 3.06
NOD.B10Sn-H2b/J f 9.27 0.373   7 0.141 0.0402 8.6, 9.8 -0.8
NOD.B10Sn-H2b/J m 9.43 0.31   4 0.155 0.0328 9.0, 9.7 -0.42
NON/ShiLtJ f 10.3 0.979   13 0.272 0.0947 8.4, 12.3 1.04
NON/ShiLtJ m 9.42 0.204   6 0.0833 0.0217 9.1, 9.7 -0.44
NZO/HlLtJ f 10.4 0.367   9 0.122 0.0353 9.7, 10.9 1.22
NZW/LacJ f 10.0 0.251   5 0.112 0.025 9.7, 10.4 0.5
NZW/LacJ m 10.6 0.171   4 0.0854 0.0161 10.4, 10.8 1.45
P/J f 9.87 0.896   3 0.517 0.0908 9.3, 10.9 0.27
P/J m 9.32 0.263   4 0.131 0.0282 9.1, 9.7 -0.6
PL/J f 9.18 0.366   6 0.149 0.0398 8.7, 9.6 -0.96
PL/J m 9.38 0.386   4 0.193 0.0412 9.0, 9.8 -0.5
PWD/PhJ f 9.92 0.194   6 0.0792 0.0196 9.6, 10.2 0.36
PWD/PhJ m 10.2 0.141   4 0.0707 0.0139 10.0, 10.3 0.81
RIIIS/J f 9.55 0.265   4 0.132 0.0277 9.3, 9.9 -0.3
RIIIS/J m 9.03 0.18   7 0.068 0.0199 8.8, 9.3 -1.07
SJL/J f 8.88 0.292   8 0.103 0.0329 8.5, 9.3 -1.5
SJL/J m 9.1 0.992   5 0.444 0.109 7.9, 10.2 -0.95
SM/J f 9.4 0.245   7 0.0926 0.0261 9.1, 9.7 -0.57
SM/J m 9.36 0.27   5 0.121 0.0289 9.1, 9.7 -0.54
SWR/J f 9.81 0.485   8 0.172 0.0495 9.1, 10.6 0.16
SWR/J m 9.5 0.316   6 0.129 0.0333 9.1, 9.9 -0.31
WSB/EiJ f 9.3 0.307   8 0.109 0.033 8.9, 9.8 -0.75
WSB/EiJ m 9.34 0.424   7 0.16 0.0454 8.8, 10.1 -0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 9.8429 0.1794 10.1962 9.4895
129S1/SvImJ m 9.4167 0.1938 9.7983 9.035
A/J f 9.4 0.1794 9.7533 9.0467
A/J m 9.075 0.2374 9.5424 8.6076
BALB/cByJ f 9.2 0.1794 9.5533 8.8467
BALB/cByJ m 8.9667 0.2741 9.5064 8.427
BTBR T+ Itpr3tf/J f 10.05 0.1938 10.4316 9.6684
BTBR T+ Itpr3tf/J m 9.82 0.2123 10.238 9.402
C3H/HeJ f 11.4667 0.1938 11.8483 11.085
C3H/HeJ m 10.3857 0.1794 10.739 10.0324
C57BL/10J f 9.6286 0.1794 9.9819 9.2753
C57BL/10J m 9.84 0.2123 10.258 9.422
C57BL/6J f 10.2375 0.1679 10.568 9.907
C57BL/6J m 10.6429 0.1794 10.9962 10.2895
C57BLKS/J f 8.9833 0.1938 9.365 8.6017
C57BLKS/J m 9.6429 0.1794 9.9962 9.2895
C57BR/cdJ f 9.5875 0.1679 9.918 9.257
C57BR/cdJ m 9.0125 0.1679 9.343 8.682
C57L/J f 9.725 0.1679 10.0555 9.3945
C57L/J m 9.34 0.2123 9.758 8.922
CBA/J f 9.9 0.1679 10.2305 9.5695
CBA/J m 9.3833 0.1938 9.765 9.0017
DBA/2J f 9.48 0.2123 9.898 9.062
DBA/2J m 10.0714 0.1794 10.4247 9.7181
KK/HlJ f 8.5889 0.1583 8.9005 8.2773
KK/HlJ m 9.9857 0.1794 10.339 9.6324
LP/J f 10.0 0.1938 10.3816 9.6184
LP/J m 10.2429 0.1794 10.5962 9.8895
MRL/MpJ f 10.35 0.3357 11.011 9.689
MRL/MpJ m 11.58 0.2123 11.998 11.162
NOD.B10Sn-H2b/J f 9.2714 0.1794 9.6247 8.9181
NOD.B10Sn-H2b/J m 9.425 0.2374 9.8924 8.9576
NON/ShiLtJ f 10.3385 0.1317 10.5977 10.0792
NON/ShiLtJ m 9.4167 0.1938 9.7983 9.035
NZW/LacJ f 10.04 0.2123 10.458 9.622
NZW/LacJ m 10.575 0.2374 11.0424 10.1076
P/J f 9.8667 0.2741 10.4064 9.327
P/J m 9.325 0.2374 9.7924 8.8576
PL/J f 9.1833 0.1938 9.565 8.8017
PL/J m 9.375 0.2374 9.8424 8.9076
PWD/PhJ f 9.9167 0.1938 10.2983 9.535
PWD/PhJ m 10.2 0.2374 10.6674 9.7326
RIIIS/J f 9.55 0.2374 10.0174 9.0826
RIIIS/J m 9.0286 0.1794 9.3819 8.6753
SJL/J f 8.875 0.1679 9.2055 8.5445
SJL/J m 9.1 0.2123 9.518 8.682
SM/J f 9.4 0.1794 9.7533 9.0467
SM/J m 9.36 0.2123 9.778 8.942
SWR/J f 9.8125 0.1679 10.143 9.482
SWR/J m 9.5 0.1938 9.8816 9.1184
WSB/EiJ f 9.3 0.1679 9.6305 8.9695
WSB/EiJ m 9.3429 0.1794 9.6962 8.9895


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.6298 0.1321 9.8898 9.3697
A/J both 9.2375 0.1488 9.5304 8.9446
BALB/cByJ both 9.0833 0.1638 9.4059 8.7608
BTBR T+ Itpr3tf/J both 9.935 0.1437 10.218 9.652
C3H/HeJ both 10.9262 0.1321 11.1862 10.6662
C57BL/10J both 9.7343 0.139 10.008 9.4606
C57BL/6J both 10.4402 0.1229 10.6821 10.1983
C57BLKS/J both 9.3131 0.1321 9.5731 9.0531
C57BR/cdJ both 9.3 0.1187 9.5337 9.0663
C57L/J both 9.5325 0.1353 9.7989 9.2661
CBA/J both 9.6417 0.1282 9.8941 9.3893
DBA/2J both 9.7757 0.139 10.0494 9.502
KK/HlJ both 9.2873 0.1196 9.5228 9.0518
LP/J both 10.1214 0.1321 10.3815 9.8614
MRL/MpJ both 10.965 0.1986 11.356 10.574
NOD.B10Sn-H2b/J both 9.3482 0.1488 9.6412 9.0553
NON/ShiLtJ both 9.8776 0.1172 10.1082 9.6469
NZW/LacJ both 10.3075 0.1592 10.621 9.994
P/J both 9.5958 0.1813 9.9528 9.2389
PL/J both 9.2792 0.1532 9.5809 8.9775
PWD/PhJ both 10.0583 0.1532 10.36 9.7566
RIIIS/J both 9.2893 0.1488 9.5822 8.9963
SJL/J both 8.9875 0.1353 9.2539 8.7211
SM/J both 9.38 0.139 9.6537 9.1063
SWR/J both 9.6562 0.1282 9.9087 9.4038
WSB/EiJ both 9.3214 0.1229 9.5633 9.0795




  GWAS USING LINEAR MIXED MODELS