Project measure / variable:   Yuan3   Ca_M12

ID, description, units MPD:24417   Ca_M12   calcium (serum Ca)   [mg/dL]  at age 12mo  
Data set, strains Yuan3   inbred   31 strains     sex: both     age: 52wks
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  STRAIN COMPARISON PLOT
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Yuan3 - calcium (serum Ca) at age 12mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested31 strains28 strains
Mean of the strain means10.2   mg/dL 9.98   mg/dL
Median of the strain means10.2   mg/dL 9.92   mg/dL
SD of the strain means± 0.927 ± 0.629
Coefficient of variation (CV)0.0911 0.0630
Min–max range of strain means8.62   –   12.3   mg/dL 8.85   –   11.9   mg/dL
Mean sample size per strain6.0   mice 6.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.5909 0.5909 3.538 0.061
strain 24 124.9214 5.2051 31.1667 < 0.0001
sex:strain 24 41.3197 1.7217 10.3089 < 0.0001
Residuals 278 46.428 0.167


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.0 0.139   8 0.0491 0.0139 9.9, 10.3 -0.19
129S1/SvImJ m 9.61 0.253   8 0.0895 0.0263 9.2, 9.9 -0.58
A/J f 9.02 0.327   5 0.146 0.0363 8.8, 9.6 -1.25
A/J m 9.78 0.29   16 0.0726 0.0297 9.3, 10.2 -0.31
AKR/J f 11.6 0.849   2   0.6 0.0731 11.0, 12.2 1.54
AKR/J m 9.8 0.608   3 0.351 0.0621 9.1, 10.2 -0.28
BALB/cByJ f 9.24 0.215   7 0.0812 0.0233 8.9, 9.5 -1.01
BALB/cByJ m 9.62 0.831   8 0.294 0.0863 8.9, 11.2 -0.57
BTBR T+ Itpr3tf/J f 10.3 0.306   8 0.108 0.0296 9.9, 10.7 0.13
BTBR T+ Itpr3tf/J m 10.2 0.373   7 0.141 0.0365 9.7, 10.6 0.36
BUB/BnJ f 8.62 0.421   5 0.188 0.0488 8.2, 9.2 -1.68
BUB/BnJ m 8.97 0.158   8 0.0559 0.0176 8.8, 9.2 -1.6
C3H/HeJ f 10.3 0.17   7 0.0644 0.0165 10.1, 10.6 0.13
C3H/HeJ m 9.91 0.248   7 0.0937 0.025 9.6, 10.2 -0.1
C57BL/10J f 9.98 0.264   6 0.108 0.0264 9.7, 10.4 -0.21
C57BL/10J m 10.1 0.115   7 0.0436 0.0114 9.9, 10.2 0.2
C57BL/6J f 10.2 0.277   8 0.0981 0.0273 9.7, 10.6 0.03
C57BL/6J m 10.6 0.25   8 0.0885 0.0237 10.2, 10.8 0.99
C57BLKS/J f 9.06 0.417   8 0.148 0.046 8.4, 9.6 -1.2
C57BLKS/J m 10.1 0.189   8 0.0666 0.0187 9.8, 10.4 0.2
C57BR/cdJ f 9.0 0.2   3 0.115 0.0222 8.8, 9.2 -1.27
C57BR/cdJ m 10.6 0.366   8 0.13 0.0344 10.1, 11.2 0.99
C57L/J f 9.38 0.376   6 0.154 0.0401 8.8, 9.9 -0.86
C57L/J m 9.46 0.31   7 0.117 0.0328 9.0, 9.9 -0.82
CAST/EiJ f 8.63 0.18   7 0.068 0.0209 8.3, 8.8 -1.67
CBA/J f 9.62 0.172   6 0.0703 0.0179 9.4, 9.8 -0.6
CBA/J m 10.1 0.534   6 0.218 0.0528 9.4, 10.9 0.2
DBA/2J f 10.3 0.586   3 0.338 0.0571 9.6, 10.7 0.13
DBA/2J m 8.9 0.255   5 0.114 0.0286 8.5, 9.1 -1.71
FVB/NJ f 10.7 0.385   8 0.136 0.036 10.1, 11.3 0.56
FVB/NJ m 9.63 0.493   3 0.285 0.0512 9.3, 10.2 -0.55
KK/HlJ f 9.25 0.256   8 0.0906 0.0277 8.8, 9.7 -1.0
KK/HlJ m 9.7 0.707   2   0.5 0.0729 9.2, 10.2 -0.44
LP/J f 10.4 0.214   6 0.0872 0.0206 10.1, 10.6 0.24
LP/J m 9.7 0.0   1   0.0 0.0 9.7, 9.7 -0.44
MRL/MpJ f 12.3 0.586   3 0.338 0.0478 11.6, 12.7 2.29
MRL/MpJ m 11.9 0.725   7 0.274 0.0607 11.1, 13.2 3.06
NOD.B10Sn-H2b/J f 9.83 0.163   6 0.0667 0.0166 9.6, 10.1 -0.37
NOD.B10Sn-H2b/J m 10.1 0.28   6 0.115 0.0279 9.8, 10.4 0.2
NON/ShiLtJ f 11.9 0.599   8 0.212 0.0503 11.1, 12.8 1.86
NON/ShiLtJ m 10.6 0.329   7 0.124 0.0311 10.0, 11.0 0.99
NZO/HlLtJ f 11.8 0.0   1   0.0 0.0 11.8, 11.8 1.75
NZO/HlLtJ m 10.1 0.482   6 0.197 0.0477 9.5, 10.8 0.2
NZW/LacJ f 10.6 0.198   7 0.0747 0.0187 10.2, 10.8 0.46
NZW/LacJ m 10.8 0.274   6 0.112 0.0255 10.4, 11.1 1.31
P/J f 10.9 0.208   7 0.0787 0.0191 10.6, 11.2 0.78
PL/J f 10.9 0.0   1   0.0 0.0 10.9, 10.9 0.78
PL/J m 10.5 0.2   3 0.115 0.019 10.3, 10.7 0.83
PWD/PhJ f 10.7 0.349   8 0.124 0.0327 10.4, 11.4 0.56
PWD/PhJ m 9.93 0.377   8 0.133 0.038 9.3, 10.4 -0.07
RIIIS/J f 10.1 0.255   8 0.0901 0.0253 9.7, 10.5 -0.08
RIIIS/J m 9.83 0.104   8 0.0366 0.0105 9.7, 10.0 -0.23
SJL/J f 9.95 0.428   6 0.175 0.043 9.4, 10.6 -0.24
SJL/J m 8.85 0.387   4 0.194 0.0438 8.3, 9.2 -1.79
SM/J f 10.4 0.212   7 0.08 0.0203 10.1, 10.6 0.24
SM/J m 9.52 1.09   9 0.364 0.115 7.8, 10.9 -0.72
SWR/J f 10.2 0.762   5 0.341 0.0747 9.3, 11.3 0.03
SWR/J m 10.4 0.306   6 0.125 0.0295 10.0, 10.8 0.68
WSB/EiJ f 10.3 0.264   6 0.108 0.0256 10.0, 10.6 0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.025 0.1445 10.3094 9.7406
129S1/SvImJ m 9.6125 0.1445 9.8969 9.3281
A/J f 9.02 0.1828 9.3798 8.6602
A/J m 9.7813 0.1022 9.9824 9.5801
AKR/J f 11.6 0.289 12.1688 11.0312
AKR/J m 9.8 0.2359 10.2645 9.3355
BALB/cByJ f 9.2429 0.1545 9.5469 8.9388
BALB/cByJ m 9.625 0.1445 9.9094 9.3406
BTBR T+ Itpr3tf/J f 10.325 0.1445 10.6094 10.0406
BTBR T+ Itpr3tf/J m 10.2286 0.1545 10.5326 9.9245
BUB/BnJ f 8.62 0.1828 8.9798 8.2602
BUB/BnJ m 8.975 0.1445 9.2594 8.6906
C3H/HeJ f 10.3286 0.1545 10.6326 10.0245
C3H/HeJ m 9.9143 0.1545 10.2183 9.6102
C57BL/10J f 9.9833 0.1668 10.3118 9.6549
C57BL/10J m 10.1 0.1545 10.4041 9.7959
C57BL/6J f 10.1625 0.1445 10.4469 9.8781
C57BL/6J m 10.5625 0.1445 10.8469 10.2781
C57BLKS/J f 9.0625 0.1445 9.3469 8.7781
C57BLKS/J m 10.0875 0.1445 10.3719 9.8031
C57BR/cdJ f 9.0 0.2359 9.4645 8.5355
C57BR/cdJ m 10.65 0.1445 10.9344 10.3656
C57L/J f 9.3833 0.1668 9.7118 9.0549
C57L/J m 9.4571 0.1545 9.7612 9.1531
CBA/J f 9.6167 0.1668 9.9451 9.2882
CBA/J m 10.1167 0.1668 10.4451 9.7882
DBA/2J f 10.2667 0.2359 10.7311 9.8022
DBA/2J m 8.9 0.1828 9.2598 8.5402
FVB/NJ f 10.675 0.1445 10.9594 10.3906
FVB/NJ m 9.6333 0.2359 10.0978 9.1689
KK/HlJ f 9.25 0.1445 9.5344 8.9656
KK/HlJ m 9.7 0.289 10.2688 9.1312
MRL/MpJ f 12.2667 0.2359 12.7311 11.8022
MRL/MpJ m 11.9429 0.1545 12.2469 11.6388
NOD.B10Sn-H2b/J f 9.8333 0.1668 10.1618 9.5049
NOD.B10Sn-H2b/J m 10.0667 0.1668 10.3951 9.7382
NON/ShiLtJ f 11.925 0.1445 12.2094 11.6406
NON/ShiLtJ m 10.5857 0.1545 10.8898 10.2817
NZW/LacJ f 10.5714 0.1545 10.8755 10.2674
NZW/LacJ m 10.75 0.1668 11.0784 10.4216
PWD/PhJ f 10.675 0.1445 10.9594 10.3906
PWD/PhJ m 9.925 0.1445 10.2094 9.6406
RIIIS/J f 10.075 0.1445 10.3594 9.7906
RIIIS/J m 9.825 0.1445 10.1094 9.5406
SJL/J f 9.95 0.1668 10.2784 9.6216
SJL/J m 8.85 0.2043 9.2522 8.4478
SM/J f 10.4143 0.1545 10.7183 10.1102
SM/J m 9.5222 0.1362 9.7904 9.2541
SWR/J f 10.2 0.1828 10.5598 9.8402
SWR/J m 10.3833 0.1668 10.7118 10.0549


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 9.8188 0.1022 10.0199 9.6176
A/J both 9.4006 0.1047 9.6067 9.1945
AKR/J both 10.7 0.1865 11.0672 10.3328
BALB/cByJ both 9.4339 0.1058 9.6421 9.2258
BTBR T+ Itpr3tf/J both 10.2768 0.1058 10.485 10.0686
BUB/BnJ both 8.7975 0.1165 9.0268 8.5682
C3H/HeJ both 10.1214 0.1092 10.3364 9.9064
C57BL/10J both 10.0417 0.1137 10.2654 9.8179
C57BL/6J both 10.3625 0.1022 10.5636 10.1614
C57BLKS/J both 9.575 0.1022 9.7761 9.3739
C57BR/cdJ both 9.825 0.1383 10.0973 9.5527
C57L/J both 9.4202 0.1137 9.644 9.1965
CBA/J both 9.8667 0.118 10.0989 9.6344
DBA/2J both 9.5833 0.1492 9.8771 9.2896
FVB/NJ both 10.1542 0.1383 10.4265 9.8819
KK/HlJ both 9.475 0.1615 9.793 9.157
MRL/MpJ both 12.1048 0.141 12.3823 11.8272
NOD.B10Sn-H2b/J both 9.95 0.118 10.1822 9.7178
NON/ShiLtJ both 11.2554 0.1058 11.4635 11.0472
NZW/LacJ both 10.6607 0.1137 10.8845 10.4369
PWD/PhJ both 10.3 0.1022 10.5011 10.0989
RIIIS/J both 9.95 0.1022 10.1511 9.7489
SJL/J both 9.4 0.1319 9.6596 9.1404
SM/J both 9.9683 0.103 10.171 9.7655
SWR/J both 10.2917 0.1237 10.5352 10.0481




  GWAS USING LINEAR MIXED MODELS