Project measure / variable:   Yuan3   Ca_M06

ID, description, units MPD:24416   Ca_M06   calcium (serum Ca)   [mg/dL]  at age 6mo  
Data set, strains Yuan3   inbred   30 strains     sex: both     age: 26wks
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  STRAIN COMPARISON PLOT
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Yuan3 - calcium (serum Ca) at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains25 strains
Mean of the strain means10.0   mg/dL 9.91   mg/dL
Median of the strain means9.94   mg/dL 9.73   mg/dL
SD of the strain means± 0.568 ± 0.493
Coefficient of variation (CV)0.0567 0.0497
Min–max range of strain means9.07   –   12.0   mg/dL 9.27   –   11.0   mg/dL
Mean sample size per strain7.6   mice 7.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.9643 0.9643 7.4175 0.0068
strain 22 70.5062 3.2048 24.6521 < 0.0001
sex:strain 22 14.7225 0.6692 5.1476 < 0.0001
Residuals 308 40.0407 0.13


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.9 0.152   6 0.0619 0.014 10.6, 11.0 1.57
129S1/SvImJ m 9.64 0.151   7 0.0571 0.0157 9.4, 9.8 -0.56
A/J f 9.95 0.403   16 0.101 0.0405 9.4, 10.8 -0.1
A/J m 10.0 0.292   8 0.103 0.0291 9.8, 10.7 0.18
BALB/cByJ f 9.49 0.23   8 0.0811 0.0242 9.1, 9.8 -0.91
BALB/cByJ m 9.45 0.141   8 0.05 0.015 9.3, 9.6 -0.94
BTBR T+ Itpr3tf/J f 10.3 0.191   4 0.0957 0.0185 10.2, 10.6 0.51
BTBR T+ Itpr3tf/J m 9.95 0.22   8 0.0779 0.0221 9.6, 10.2 0.07
BUB/BnJ f 9.7 0.394   5 0.176 0.0406 9.4, 10.3 -0.54
BUB/BnJ m 9.72 0.306   6 0.125 0.0315 9.3, 10.1 -0.39
C3H/HeJ f 10.1 0.198   8 0.0701 0.0196 9.9, 10.4 0.16
C3H/HeJ m 10.1 0.197   6 0.0803 0.0194 9.8, 10.4 0.38
C57BL/10J f 10.1 0.329   8 0.116 0.0327 9.5, 10.4 0.16
C57BL/10J m 9.73 0.225   6 0.0919 0.0231 9.5, 10.1 -0.37
C57BL/6J f 9.39 0.259   8 0.0915 0.0276 9.0, 9.7 -1.09
C57BL/6J m 9.7 0.432   4 0.216 0.0445 9.3, 10.3 -0.43
C57BLKS/J f 9.61 0.304   8 0.108 0.0317 9.1, 10.0 -0.7
C57BLKS/J m 9.53 0.236   7 0.0892 0.0248 9.3, 9.9 -0.78
C57BR/cdJ m 9.7 0.4   3 0.231 0.0412 9.3, 10.1 -0.43
C57L/J f 9.95 0.273   8 0.0964 0.0274 9.5, 10.3 -0.1
C57L/J m 9.95 0.693   8 0.245 0.0696 8.8, 10.7 0.07
CAST/EiJ f 9.07 0.359   4 0.18 0.0396 8.6, 9.4 -1.65
CBA/J f 9.75 0.315   6 0.128 0.0323 9.3, 10.2 -0.46
DBA/2J f 9.93 0.427   8 0.151 0.043 9.0, 10.4 -0.14
DBA/2J m 10.4 0.376   16 0.094 0.036 9.9, 11.2 0.99
FVB/NJ f 9.83 0.32   14 0.0854 0.0325 9.4, 10.3 -0.31
FVB/NJ m 9.38 0.254   9 0.0846 0.0271 8.8, 9.7 -1.08
KK/HlJ f 9.6 0.258   7 0.0976 0.0269 9.2, 9.9 -0.72
LP/J f 9.97 0.219   8 0.0773 0.0219 9.7, 10.3 -0.07
LP/J m 9.91 0.506   8 0.179 0.051 9.3, 10.7 -0.01
MOLF/EiJ f 9.77 0.486   7 0.184 0.0497 9.0, 10.6 -0.42
MOLF/EiJ m 9.73 0.468   6 0.191 0.048 9.2, 10.4 -0.37
MRL/MpJ m 10.8 0.498   8 0.176 0.046 10.5, 12.0 1.8
NOD.B10Sn-H2b/J f 9.82 0.409   9 0.136 0.0416 9.4, 10.4 -0.33
NOD.B10Sn-H2b/J m 9.7 0.163   4 0.0816 0.0168 9.5, 9.9 -0.43
NON/ShiLtJ f 10.5 0.23   8 0.0811 0.0219 10.1, 10.8 0.87
NON/ShiLtJ m 10.7 0.434   8 0.154 0.0408 10.1, 11.3 1.6
NZO/HlLtJ f 12.0 0.295   5 0.132 0.0246 11.7, 12.3 3.51
NZO/HlLtJ m 10.8 0.841   6 0.343 0.0775 9.7, 11.6 1.8
NZW/LacJ f 10.2 0.141   8 0.0498 0.0139 9.9, 10.4 0.34
P/J f 10.4 0.189   8 0.0666 0.0181 10.2, 10.7 0.69
P/J m 9.45 0.262   8 0.0926 0.0277 9.1, 9.8 -0.94
PL/J f 10.7 0.648   10 0.205 0.0604 10.0, 12.0 1.22
PL/J m 11.0 0.69   8 0.244 0.0628 9.4, 11.6 2.2
PWD/PhJ f 10.3 0.227   8 0.0802 0.022 10.0, 10.7 0.51
PWD/PhJ m 10.3 0.256   7 0.0969 0.025 10.0, 10.6 0.78
RIIIS/J f 9.88 0.172   6 0.0703 0.0174 9.7, 10.1 -0.23
RIIIS/J m 9.59 0.217   8 0.0766 0.0226 9.3, 9.9 -0.66
SJL/J f 10.1 0.233   8 0.0824 0.0231 9.8, 10.5 0.16
SM/J f 9.66 0.25   8 0.0885 0.0259 9.2, 9.9 -0.61
SM/J m 9.34 0.282   7 0.107 0.0302 8.9, 9.6 -1.16
WSB/EiJ f 9.27 0.275   7 0.104 0.0297 8.9, 9.7 -1.3
WSB/EiJ m 9.27 0.0816   6 0.0333 0.00881 9.2, 9.4 -1.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.85 0.1472 11.1396 10.5604
129S1/SvImJ m 9.6429 0.1363 9.911 9.3747
A/J f 9.95 0.0901 10.1274 9.7726
A/J m 10.0375 0.1275 10.2883 9.7867
BALB/cByJ f 9.4875 0.1275 9.7383 9.2367
BALB/cByJ m 9.45 0.1275 9.7008 9.1992
BTBR T+ Itpr3tf/J f 10.35 0.1803 10.7047 9.9953
BTBR T+ Itpr3tf/J m 9.95 0.1275 10.2008 9.6992
BUB/BnJ f 9.7 0.1612 10.0173 9.3827
BUB/BnJ m 9.7167 0.1472 10.0063 9.427
C3H/HeJ f 10.125 0.1275 10.3758 9.8742
C3H/HeJ m 10.1333 0.1472 10.423 9.8437
C57BL/10J f 10.0625 0.1275 10.3133 9.8117
C57BL/10J m 9.7333 0.1472 10.023 9.4437
C57BL/6J f 9.3875 0.1275 9.6383 9.1367
C57BL/6J m 9.7 0.1803 10.0547 9.3453
C57BLKS/J f 9.6125 0.1275 9.8633 9.3617
C57BLKS/J m 9.5286 0.1363 9.7967 9.2604
C57L/J f 9.95 0.1275 10.2008 9.6992
C57L/J m 9.95 0.1275 10.2008 9.6992
DBA/2J f 9.925 0.1275 10.1758 9.6742
DBA/2J m 10.4438 0.0901 10.6211 10.2664
FVB/NJ f 9.8286 0.0964 10.0182 9.639
FVB/NJ m 9.3778 0.1202 9.6143 9.1413
LP/J f 9.975 0.1275 10.2258 9.7242
LP/J m 9.9125 0.1275 10.1633 9.6617
MOLF/EiJ f 9.7714 0.1363 10.0396 9.5033
MOLF/EiJ m 9.7333 0.1472 10.023 9.4437
NOD.B10Sn-H2b/J f 9.8222 0.1202 10.0587 9.5857
NOD.B10Sn-H2b/J m 9.7 0.1803 10.0547 9.3453
NON/ShiLtJ f 10.4875 0.1275 10.7383 10.2367
NON/ShiLtJ m 10.65 0.1275 10.9008 10.3992
NZO/HlLtJ f 11.98 0.1612 12.2973 11.6627
NZO/HlLtJ m 10.85 0.1472 11.1396 10.5604
P/J f 10.4125 0.1275 10.6633 10.1617
P/J m 9.45 0.1275 9.7008 9.1992
PL/J f 10.73 0.114 10.9544 10.5056
PL/J m 10.9875 0.1275 11.2383 10.7367
PWD/PhJ f 10.3 0.1275 10.5508 10.0492
PWD/PhJ m 10.2714 0.1363 10.5396 10.0033
RIIIS/J f 9.8833 0.1472 10.173 9.5937
RIIIS/J m 9.5875 0.1275 9.8383 9.3367
SM/J f 9.6625 0.1275 9.9133 9.4117
SM/J m 9.3429 0.1363 9.611 9.0747
WSB/EiJ f 9.2714 0.1363 9.5396 9.0033
WSB/EiJ m 9.2667 0.1472 9.5563 8.977


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.2464 0.1003 10.4438 10.0491
A/J both 9.9938 0.0781 10.1474 9.8401
BALB/cByJ both 9.4688 0.0901 9.6461 9.2914
BTBR T+ Itpr3tf/J both 10.15 0.1104 10.3672 9.9328
BUB/BnJ both 9.7083 0.1092 9.9231 9.4935
C3H/HeJ both 10.1292 0.0974 10.3207 9.9376
C57BL/10J both 9.8979 0.0974 10.0895 9.7063
C57BL/6J both 9.5438 0.1104 9.761 9.3265
C57BLKS/J both 9.5705 0.0933 9.7541 9.3869
C57L/J both 9.95 0.0901 10.1274 9.7726
DBA/2J both 10.1844 0.0781 10.338 10.0308
FVB/NJ both 9.6032 0.077 9.7547 9.4516
LP/J both 9.9438 0.0901 10.1211 9.7664
MOLF/EiJ both 9.7524 0.1003 9.9497 9.555
NOD.B10Sn-H2b/J both 9.7611 0.1083 9.9743 9.5479
NON/ShiLtJ both 10.5688 0.0901 10.7461 10.3914
NZO/HlLtJ both 11.415 0.1092 11.6298 11.2002
P/J both 9.9313 0.0901 10.1086 9.7539
PL/J both 10.8588 0.0855 11.027 10.6905
PWD/PhJ both 10.2857 0.0933 10.4693 10.1021
RIIIS/J both 9.7354 0.0974 9.927 9.5438
SM/J both 9.5027 0.0933 9.6863 9.3191
WSB/EiJ both 9.269 0.1003 9.4664 9.0717




  GWAS USING LINEAR MIXED MODELS