Project measure / variable:   Petkova1   CD8_naive_M18

ID, description, units MPD:24258   CD8_naive_M18   CD8 T cells, naive, as percentage of total CD8 T cells   [%]  at age 18mo  
Data set, strains Petkova1   inbred   30 strains     sex: both     age: 78wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Petkova1 - CD8 T cells, naive, as percentage of total CD8 T cells at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains25 strains
Mean of the strain means44.7   % 48.7   %
Median of the strain means43.3   % 48.3   %
SD of the strain means± 19.2 ± 21.6
Coefficient of variation (CV)0.431 0.443
Min–max range of strain means0.0352   –   78.7   % 0.0734   –   87.3   %
Mean sample size per strain7.3   mice 6.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2317.7805 2317.7805 9.2611 0.0026
strain 22 111764.3485 5080.1977 20.2988 < 0.0001
sex:strain 22 19000.0124 863.6369 3.4508 < 0.0001
Residuals 278 69575.4315 250.2713


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 69.7 4.23   7 1.6 0.0606 64.3, 76.2 1.3
129S1/SvImJ m 64.2 7.88   8 2.78 0.123 46.7, 70.8 0.72
A/J f 43.9 13.1   8 4.65 0.299 20.3, 59.0 -0.04
BALB/cByJ f 20.3 9.52   8 3.37 0.469 2.94, 30.8 -1.27
BALB/cByJ m 25.6 15.9   6 6.5 0.622 14.5, 56.2 -1.07
BTBR T+ Itpr3tf/J f 77.7 5.88   8 2.08 0.0757 64.7, 82.7 1.72
BTBR T+ Itpr3tf/J m 77.6 9.14   5 4.09 0.118 63.0, 86.1 1.34
BUB/BnJ f 39.5 21.7   8 7.66 0.549 16.9, 77.7 -0.27
BUB/BnJ m 49.4 16.3   6 6.65 0.33 29.2, 66.3 0.03
C3H/HeJ f 52.9 11.0   8 3.89 0.208 35.2, 73.9 0.43
C3H/HeJ m 60.6 15.6   8 5.5 0.256 24.8, 74.0 0.55
C57BL/10J f 17.6 8.81   7 3.33 0.5 7.56, 31.8 -1.41
C57BL/10J m 15.3 0.0   1   0.0 0.0 15.3, 15.3 -1.55
C57BL/6J f 28.8 14.3   8 5.07 0.497 10.8, 48.0 -0.82
C57BL/6J m 38.3 14.0   7 5.29 0.366 23.2, 63.6 -0.48
C57BLKS/J f 56.7 4.35   7 1.65 0.0768 50.9, 64.0 0.63
C57BR/cdJ f 36.0 12.5   8 4.41 0.347 12.7, 55.9 -0.45
C57BR/cdJ m 38.0 10.9   8 3.87 0.288 25.8, 56.2 -0.5
C57L/J f 32.2 19.7   8 6.97 0.611 5.7, 63.2 -0.65
C57L/J m 53.9 14.3   6 5.83 0.265 31.7, 71.9 0.24
CBA/J f 47.1 10.2   8 3.59 0.216 33.5, 58.5 0.13
CBA/J m 61.0 6.38   6 2.6 0.105 53.2, 70.1 0.57
DBA/2J f 28.4 13.9   7 5.24 0.488 7.31, 51.4 -0.85
DBA/2J m 48.3 6.76   8 2.39 0.14 36.1, 57.8 -0.02
FVB/NJ f 50.7 14.0   8 4.97 0.277 21.4, 62.9 0.31
KK/HlJ f 49.2 21.0   7 7.93 0.426 30.3, 89.8 0.24
KK/HlJ m 51.9 12.2   7 4.62 0.235 34.3, 64.2 0.15
LP/J f 70.8 19.4   7 7.33 0.274 36.8, 84.4 1.36
LP/J m 52.6 21.7   8 7.66 0.412 20.0, 75.1 0.18
MOLF/EiJ f 0.0352 0.0365   9 0.0122 1.04 -2.32
MOLF/EiJ m 0.0734 0.127   7 0.048 1.73 -2.25
MRL/MpJ f 52.8 14.7   6 5.99 0.278 31.4, 69.7 0.42
MRL/MpJ m 44.2 20.0   8 7.08 0.453 22.6, 73.6 -0.21
NOD.B10Sn-H2b/J f 16.3 17.6   7 6.64 1.07 5.74, 54.7 -1.47
NOD.B10Sn-H2b/J m 45.4 10.6   6 4.32 0.233 32.6, 62.8 -0.16
NON/ShiLtJ f 43.3 23.6   7 8.91 0.544 13.7, 81.5 -0.07
NON/ShiLtJ m 47.4 17.8   7 6.71 0.374 17.1, 65.4 -0.06
NZO/HlLtJ f 36.5 16.5   3 9.52 0.451 22.5, 54.7 -0.42
NZW/LacJ f 66.6 28.6   8 10.1 0.429 0.27, 86.7 1.14
NZW/LacJ m 81.2 8.38   7 3.17 0.103 64.3, 89.6 1.5
P/J f 35.0 15.6   5 6.99 0.447 20.9, 59.4 -0.5
P/J m 16.2 7.23   4 3.61 0.447 7.38, 25.0 -1.51
PL/J f 74.2 4.09   4 2.05 0.0551 69.7, 79.6 1.54
PL/J m 22.3 2.85   5 1.28 0.128 17.9, 25.2 -1.23
PWD/PhJ f 43.2 23.4   8 8.26 0.541 6.7, 74.8 -0.08
PWD/PhJ m 46.0 15.5   8 5.47 0.336 25.5, 80.0 -0.13
RIIIS/J m 69.2 9.72   8 3.44 0.14 58.2, 80.9 0.95
SJL/J f 39.2 17.9   8 6.34 0.457 20.7, 70.6 -0.28
SJL/J m 46.4 27.0   7 10.2 0.582 9.71, 85.7 -0.11
SM/J f 45.2 6.58   7 2.49 0.145 36.4, 54.0 0.03
SWR/J f 42.4 26.3   7 9.93 0.619 4.14, 64.0 -0.12
SWR/J m 76.3 7.54   6 3.08 0.0988 63.2, 83.7 1.28
WSB/EiJ f 78.7 24.5   8 8.67 0.312 18.1, 89.6 1.77
WSB/EiJ m 87.3 1.85   7 0.699 0.0212 85.0, 90.2 1.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 69.6714 5.9794 81.4421 57.9008
129S1/SvImJ m 64.2375 5.5932 75.2479 53.2271
BALB/cByJ f 20.28 5.5932 31.2904 9.2696
BALB/cByJ m 25.5833 6.4585 38.2971 12.8696
BTBR T+ Itpr3tf/J f 77.6625 5.5932 88.6729 66.6521
BTBR T+ Itpr3tf/J m 77.6 7.0749 91.5272 63.6728
BUB/BnJ f 39.4625 5.5932 50.4729 28.4521
BUB/BnJ m 49.3833 6.4585 62.0971 36.6696
C3H/HeJ f 52.85 5.5932 63.8604 41.8396
C3H/HeJ m 60.6375 5.5932 71.6479 49.6271
C57BL/6J f 28.8375 5.5932 39.8479 17.8271
C57BL/6J m 38.2714 5.9794 50.0421 26.5008
C57BR/cdJ f 35.9625 5.5932 46.9729 24.9521
C57BR/cdJ m 37.95 5.5932 48.9604 26.9396
C57L/J f 32.2375 5.5932 43.2479 21.2271
C57L/J m 53.9333 6.4585 66.6471 41.2196
CBA/J f 47.05 5.5932 58.0604 36.0396
CBA/J m 60.9833 6.4585 73.6971 48.2696
DBA/2J f 28.3871 5.9794 40.1578 16.6165
DBA/2J m 48.3 5.5932 59.3104 37.2896
KK/HlJ f 49.2 5.9794 60.9706 37.4294
KK/HlJ m 51.9 5.9794 63.6706 40.1294
LP/J f 70.8429 5.9794 82.6135 59.0722
LP/J m 52.625 5.5932 63.6354 41.6146
MOLF/EiJ f 0.0352 5.2733 10.4159 0.0
MOLF/EiJ m 0.0734 5.9794 11.8441 0.0
MRL/MpJ f 52.8333 6.4585 65.5471 40.1196
MRL/MpJ m 44.225 5.5932 55.2354 33.2146
NOD.B10Sn-H2b/J f 16.3386 5.9794 28.1092 4.5679
NOD.B10Sn-H2b/J m 45.4167 6.4585 58.1304 32.7029
NON/ShiLtJ f 43.3286 5.9794 55.0992 31.5579
NON/ShiLtJ m 47.4143 5.9794 59.1849 35.6437
NZW/LacJ f 66.5713 5.5932 77.5817 55.5608
NZW/LacJ m 81.2143 5.9794 92.9849 69.4437
P/J f 34.98 7.0749 48.9072 21.0528
P/J m 16.17 7.91 31.7411 0.5989
PL/J f 74.25 7.91 89.8211 58.6789
PL/J m 22.3 7.0749 36.2272 8.3728
PWD/PhJ f 43.225 5.5932 54.2354 32.2146
PWD/PhJ m 46.0125 5.5932 57.0229 35.0021
SJL/J f 39.2125 5.5932 50.2229 28.2021
SJL/J m 46.3586 5.9794 58.1292 34.5879
SWR/J f 42.43 5.9794 54.2006 30.6594
SWR/J m 76.3 6.4585 89.0137 63.5863
WSB/EiJ f 78.675 5.5932 89.6854 67.6646
WSB/EiJ m 87.2714 5.9794 99.0421 75.5008


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 66.9545 4.0938 75.0133 58.8957
BALB/cByJ both 22.9317 4.2719 31.341 14.5223
BTBR T+ Itpr3tf/J both 77.6313 4.5094 86.5081 68.7544
BUB/BnJ both 44.4229 4.2719 52.8323 36.0136
C3H/HeJ both 56.7437 3.955 64.5293 48.9582
C57BL/6J both 33.5545 4.0938 41.6133 25.4957
C57BR/cdJ both 36.9562 3.955 44.7418 29.1707
C57L/J both 43.0854 4.2719 51.4948 34.6761
CBA/J both 54.0167 4.2719 62.426 45.6073
DBA/2J both 38.3436 4.0938 46.4024 30.2848
KK/HlJ both 50.55 4.2281 58.8731 42.2269
LP/J both 61.7339 4.0938 69.7927 53.6751
MOLF/EiJ both 0.0543 3.9863 7.9014 0.0
MRL/MpJ both 48.5292 4.2719 56.9385 40.1198
NOD.B10Sn-H2b/J both 30.8776 4.4007 39.5406 22.2147
NON/ShiLtJ both 45.3714 4.2281 53.6945 37.0483
NZW/LacJ both 73.8928 4.0938 81.9516 65.834
P/J both 25.575 5.3062 36.0204 15.1296
PL/J both 48.275 5.3062 58.7204 37.8296
PWD/PhJ both 44.6187 3.955 52.4043 36.8332
SJL/J both 42.7855 4.0938 50.8443 34.7267
SWR/J both 59.365 4.4007 68.0279 50.7021
WSB/EiJ both 82.9732 4.0938 91.032 74.9144




  GWAS USING LINEAR MIXED MODELS