Project measure / variable:   Petkova1   CD8_naive_M12

ID, description, units MPD:24257   CD8_naive_M12   CD8 T cells, naive, as percentage of total CD8 T cells   [%]  at age 12mo  
Data set, strains Petkova1   inbred   31 strains     sex: both     age: 52wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Petkova1 - CD8 T cells, naive, as percentage of total CD8 T cells at age 12mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested30 strains30 strains
Mean of the strain means53.8   % 54.9   %
Median of the strain means57.0   % 54.6   %
SD of the strain means± 23.3 ± 20.6
Coefficient of variation (CV)0.433 0.375
Min–max range of strain means0.103   –   87.6   % 0.0362   –   88.5   %
Mean sample size per strain7.6   mice 7.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 497.2185 497.2185 4.815 0.0288
strain 28 155735.4177 5561.9792 53.8612 < 0.0001
sex:strain 28 54386.2588 1942.3664 18.8095 < 0.0001
Residuals 389 40170.12 103.2651


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 80.2 5.75   8 2.03 0.0716 68.6, 86.2 1.13
129S1/SvImJ m 0.785 0.673   8 0.238 0.858 0.27, 2.4 -2.63
A/J f 36.5 12.6   8 4.46 0.345 13.8, 52.8 -0.74
A/J m 53.4 7.46   8 2.64 0.14 42.2, 63.4 -0.08
AKR/J m 21.7 6.05   5 2.71 0.279 15.0, 30.4 -1.62
BALB/cByJ f 18.9 2.55   8 0.9 0.134 13.4, 21.9 -1.5
BALB/cByJ m 53.8 24.1   8 8.51 0.448 9.75, 74.4 -0.06
BTBR T+ Itpr3tf/J f 82.9 2.7   8 0.955 0.0326 78.1, 86.2 1.25
BTBR T+ Itpr3tf/J m 82.6 1.72   7 0.651 0.0208 80.3, 84.9 1.34
BUB/BnJ f 42.6 8.31   6 3.39 0.195 29.5, 54.7 -0.48
BUB/BnJ m 55.5 14.8   9 4.94 0.267 42.7, 81.6 0.03
C3H/HeJ f 57.8 15.5   8 5.47 0.268 25.0, 75.8 0.17
C3H/HeJ m 58.4 9.27   8 3.28 0.159 37.9, 65.3 0.17
C57BL/10J f 18.2 11.6   8 4.09 0.636 5.61, 36.6 -1.53
C57BL/10J m 43.1 10.3   7 3.9 0.239 31.2, 60.6 -0.58
C57BL/6J f 19.3 12.6   8 4.46 0.653 4.13, 39.8 -1.48
C57BL/6J m 45.0 7.16   8 2.53 0.159 32.2, 52.5 -0.48
C57BLKS/J f 62.4 3.53   8 1.25 0.0566 56.0, 65.4 0.37
C57BLKS/J m 72.3 4.0   8 1.41 0.0553 63.3, 76.4 0.84
C57BR/cdJ f 48.0 12.3   8 4.34 0.255 24.7, 64.2 -0.25
C57BR/cdJ m 42.9 8.98   8 3.17 0.209 27.8, 57.2 -0.59
C57L/J f 64.0 9.83   7 3.72 0.154 46.0, 75.0 0.44
C57L/J m 55.9 12.5   8 4.41 0.223 32.8, 72.8 0.05
CAST/EiJ f 67.0 2.85   3 1.65 0.0426 64.1, 69.8 0.57
CBA/J f 56.3 12.8   8 4.51 0.227 31.1, 68.9 0.11
CBA/J m 59.9 5.34   8 1.89 0.0891 52.6, 68.9 0.24
DBA/2J f 45.3 8.4   6 3.43 0.186 33.5, 58.2 -0.36
DBA/2J m 52.9 4.72   7 1.78 0.0892 44.9, 57.7 -0.1
FVB/NJ f 58.9 6.22   8 2.2 0.106 51.1, 70.2 0.22
FVB/NJ m 49.6 7.78   8 2.75 0.157 38.4, 60.0 -0.26
KK/HlJ f 58.2 7.21   8 2.55 0.124 49.7, 69.2 0.19
KK/HlJ m 52.8 10.4   8 3.66 0.196 33.7, 68.1 -0.1
LP/J f 54.7 27.2   7 10.3 0.497 16.0, 82.8 0.04
LP/J m 47.6 22.1   8 7.82 0.465 20.5, 71.5 -0.36
MOLF/EiJ f 0.103 0.0313   7 0.0118 0.304 0.057, 0.14 -2.3
MOLF/EiJ m 0.0362 0.0325   9 0.0108 0.898 -2.67
MRL/MpJ f 15.9 10.3   8 3.64 0.649 6.19, 37.6 -1.62
MRL/MpJ m 66.3 14.5   8 5.13 0.219 42.4, 92.6 0.55
NON/ShiLtJ f 46.0 5.04   8 1.78 0.11 39.1, 53.8 -0.33
NON/ShiLtJ m 46.4 8.01   6 3.27 0.173 33.6, 58.1 -0.42
NZO/HlLtJ f 38.9 9.91   7 3.75 0.255 27.1, 52.2 -0.64
NZO/HlLtJ m 56.2 5.01   7 1.89 0.0891 46.9, 62.3 0.06
NZW/LacJ f 87.1 1.73   8 0.612 0.0199 85.4, 90.1 1.43
NZW/LacJ m 76.4 4.25   8 1.5 0.0557 71.1, 85.3 1.04
P/J f 65.9 8.65   8 3.06 0.131 49.1, 75.6 0.52
P/J m 47.7 3.39   7 1.28 0.071 40.2, 50.0 -0.35
PL/J f 81.5 9.85   7 3.72 0.121 59.8, 87.9 1.19
PL/J m 78.0 4.71   6 1.92 0.0605 70.8, 84.6 1.12
PWD/PhJ f 78.8 5.11   8 1.81 0.0648 72.3, 87.8 1.07
PWD/PhJ m 75.6 4.04   8 1.43 0.0534 70.0, 82.1 1.0
RIIIS/J f 83.4 4.07   8 1.44 0.0488 75.3, 88.2 1.27
RIIIS/J m 77.8 2.78   8 0.983 0.0358 72.3, 80.8 1.11
SJL/J f 38.7 17.5   8 6.18 0.452 16.1, 69.0 -0.65
SJL/J m 62.5 15.7   9 5.24 0.251 32.0, 81.0 0.37
SM/J f 62.7 4.36   8 1.54 0.0695 56.6, 69.2 0.38
SM/J m 53.5 10.7   8 3.79 0.2 39.6, 68.2 -0.07
SWR/J f 54.9 12.8   7 4.85 0.234 29.2, 70.2 0.05
SWR/J m 71.2 7.29   7 2.75 0.102 60.9, 84.2 0.79
WSB/EiJ f 87.6 3.96   8 1.4 0.0452 80.3, 91.5 1.45
WSB/EiJ m 88.5 1.93   8 0.684 0.0219 84.5, 90.4 1.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 80.2125 3.5928 87.2762 73.1488
129S1/SvImJ m 0.785 3.5928 7.8487 0.0
A/J f 36.5 3.5928 43.5637 29.4363
A/J m 53.4375 3.5928 60.5012 46.3738
BALB/cByJ f 18.95 3.5928 26.0137 11.8863
BALB/cByJ m 53.7938 3.5928 60.8575 46.73
BTBR T+ Itpr3tf/J f 82.95 3.5928 90.0137 75.8863
BTBR T+ Itpr3tf/J m 82.5857 3.8409 90.1371 75.0343
BUB/BnJ f 42.6 4.1486 50.7565 34.4435
BUB/BnJ m 55.5444 3.3873 62.2042 48.8847
C3H/HeJ f 57.7875 3.5928 64.8512 50.7238
C3H/HeJ m 58.4375 3.5928 65.5012 51.3738
C57BL/10J f 18.17 3.5928 25.2337 11.1063
C57BL/10J m 43.1143 3.8409 50.6657 35.5629
C57BL/6J f 19.2987 3.5928 26.3625 12.235
C57BL/6J m 45.025 3.5928 52.0887 37.9613
C57BLKS/J f 62.4375 3.5928 69.5012 55.3738
C57BLKS/J m 72.325 3.5928 79.3887 65.2613
C57BR/cdJ f 48.0125 3.5928 55.0762 40.9488
C57BR/cdJ m 42.9375 3.5928 50.0012 35.8738
C57L/J f 63.9571 3.8409 71.5086 56.4057
C57L/J m 55.9375 3.5928 63.0012 48.8738
CBA/J f 56.325 3.5928 63.3887 49.2613
CBA/J m 59.9375 3.5928 67.0012 52.8738
DBA/2J f 45.2833 4.1486 53.4398 37.1269
DBA/2J m 52.9429 3.8409 60.4943 45.3914
FVB/NJ f 58.85 3.5928 65.9137 51.7863
FVB/NJ m 49.625 3.5928 56.6887 42.5613
KK/HlJ f 58.1625 3.5928 65.2262 51.0988
KK/HlJ m 52.825 3.5928 59.8887 45.7613
LP/J f 54.7143 3.8409 62.2657 47.1629
LP/J m 47.575 3.5928 54.6387 40.5113
MOLF/EiJ f 0.103 3.8409 7.6544 0.0
MOLF/EiJ m 0.0362 3.3873 6.696 0.0
MRL/MpJ f 15.8662 3.5928 22.93 8.8025
MRL/MpJ m 66.2625 3.5928 73.3262 59.1988
NON/ShiLtJ f 45.9625 3.5928 53.0262 38.8988
NON/ShiLtJ m 46.3833 4.1486 54.5398 38.2269
NZO/HlLtJ f 38.8857 3.8409 46.4371 31.3343
NZO/HlLtJ m 56.2143 3.8409 63.7657 48.6629
NZW/LacJ f 87.0875 3.5928 94.1512 80.0238
NZW/LacJ m 76.4125 3.5928 83.4762 69.3488
P/J f 65.9 3.5928 72.9637 58.8363
P/J m 47.6571 3.8409 55.2086 40.1057
PL/J f 81.5286 3.8409 89.08 73.9771
PL/J m 77.9833 4.1486 86.1398 69.8269
PWD/PhJ f 78.825 3.5928 85.8887 71.7613
PWD/PhJ m 75.575 3.5928 82.6387 68.5113
RIIIS/J f 83.375 3.5928 90.4387 76.3113
RIIIS/J m 77.75 3.5928 84.8137 70.6863
SJL/J f 38.675 3.5928 45.7387 31.6113
SJL/J m 62.5222 3.3873 69.182 55.8625
SM/J f 62.6875 3.5928 69.7512 55.6238
SM/J m 53.525 3.5928 60.5887 46.4613
SWR/J f 54.8571 3.8409 62.4086 47.3057
SWR/J m 71.2 3.8409 78.7514 63.6486
WSB/EiJ f 87.6 3.5928 94.6637 80.5363
WSB/EiJ m 88.45 3.5928 95.5137 81.3863


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 40.4988 2.5405 45.4936 35.5039
A/J both 44.9687 2.5405 49.9636 39.9739
BALB/cByJ both 36.3719 2.5405 41.3667 31.3771
BTBR T+ Itpr3tf/J both 82.7679 2.6297 87.938 77.5977
BUB/BnJ both 49.0722 2.6779 54.3372 43.8072
C3H/HeJ both 58.1125 2.5405 63.1073 53.1177
C57BL/10J both 30.6421 2.6297 35.8123 25.472
C57BL/6J both 32.1619 2.5405 37.1567 27.1671
C57BLKS/J both 67.3813 2.5405 72.3761 62.3864
C57BR/cdJ both 45.475 2.5405 50.4698 40.4802
C57L/J both 59.9473 2.6297 65.1174 54.7772
CBA/J both 58.1312 2.5405 63.1261 53.1364
DBA/2J both 49.1131 2.8268 54.6708 43.5554
FVB/NJ both 54.2375 2.5405 59.2323 49.2427
KK/HlJ both 55.4938 2.5405 60.4886 50.4989
LP/J both 51.1446 2.6297 56.3148 45.9745
MOLF/EiJ both 0.0696 2.5606 5.1039 0.0
MRL/MpJ both 41.0644 2.5405 46.0592 36.0696
NON/ShiLtJ both 46.1729 2.744 51.5679 40.7779
NZO/HlLtJ both 47.55 2.7159 52.8897 42.2103
NZW/LacJ both 81.75 2.5405 86.7448 76.7552
P/J both 56.7786 2.6297 61.9487 51.6085
PL/J both 79.756 2.8268 85.3137 74.1983
PWD/PhJ both 77.2 2.5405 82.1948 72.2052
RIIIS/J both 80.5625 2.5405 85.5573 75.5677
SJL/J both 50.5986 2.4689 55.4527 45.7445
SM/J both 58.1063 2.5405 63.1011 53.1114
SWR/J both 63.0286 2.7159 68.3682 57.6889
WSB/EiJ both 88.025 2.5405 93.0198 83.0302




  GWAS USING LINEAR MIXED MODELS