Project measure / variable:   Petkova1   CD8_naive_M06

ID, description, units MPD:24256   CD8_naive_M06   CD8 T cells, naive, as percentage of total CD8 T cells   [%]  at age 6mo  
Data set, strains Petkova1   inbred   32 strains     sex: both     age: 26wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Petkova1 - CD8 T cells, naive, as percentage of total CD8 T cells at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested32 strains31 strains
Mean of the strain means33.0   % 37.7   %
Median of the strain means28.4   % 32.5   %
SD of the strain means± 27.7 ± 27.6
Coefficient of variation (CV)0.840 0.733
Min–max range of strain means0.0234   –   80.1   % 0.00275   –   89.3   %
Mean sample size per strain8.0   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 903.3006 903.3006 13.6208 0.0003
strain 30 300680.0899 10022.6697 151.1306 < 0.0001
sex:strain 30 69335.5793 2311.186 34.8501 < 0.0001
Residuals 435 28848.3026 66.3179


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 2.99 3.43   8 1.21 1.15 1.2, 11.4 -1.08
129S1/SvImJ m 3.83 0.983   8 0.348 0.257 2.36, 5.37 -1.23
A/J f 3.26 1.51   8 0.532 0.463 1.39, 6.09 -1.07
A/J m 3.0 1.37   8 0.484 0.455 1.31, 5.1 -1.26
AKR/J f 31.4 8.9   8 3.15 0.284 16.6, 42.8 -0.06
AKR/J m 31.8 5.29   8 1.87 0.166 27.1, 41.4 -0.21
BALB/cByJ f 0.712 0.255   8 0.0901 0.358 0.47, 1.26 -1.16
BALB/cByJ m 63.3 36.5   8 12.9 0.576 5.54, 91.6 0.93
BTBR T+ Itpr3tf/J f 65.9 4.29   8 1.52 0.0651 61.9, 74.6 1.19
BTBR T+ Itpr3tf/J m 67.4 7.46   8 2.64 0.111 60.6, 78.4 1.08
BUB/BnJ f 5.77 3.5   8 1.24 0.606 2.17, 12.4 -0.98
BUB/BnJ m 3.31 1.21   8 0.429 0.367 1.8, 5.34 -1.24
C3H/HeJ f 53.1 6.2   8 2.19 0.117 46.8, 65.2 0.72
C3H/HeJ m 55.5 7.06   8 2.49 0.127 42.4, 62.7 0.65
C57BL/10J f 45.5 6.72   8 2.38 0.148 32.3, 53.3 0.45
C57BL/10J m 55.8 7.6   8 2.69 0.136 45.3, 67.7 0.66
C57BL/6J f 64.9 9.49   8 3.36 0.146 52.1, 77.1 1.15
C57BL/6J m 59.1 9.39   8 3.32 0.159 44.2, 72.2 0.78
C57BLKS/J f 74.8 4.85   8 1.72 0.0648 68.5, 82.2 1.51
C57BLKS/J m 74.8 1.63   8 0.576 0.0218 72.5, 77.3 1.35
C57BR/cdJ f 10.7 3.36   8 1.19 0.314 5.14, 15.6 -0.8
C57BR/cdJ m 25.0 6.92   8 2.45 0.277 17.1, 40.4 -0.46
C57L/J f 46.6 5.44   8 1.92 0.117 35.0, 51.4 0.49
C57L/J m 45.2 12.4   8 4.39 0.274 27.3, 66.2 0.27
CAST/EiJ f 25.4 25.8   6 10.5 1.01 1.07, 51.7 -0.27
CBA/J f 47.1 8.59   8 3.04 0.182 29.8, 55.9 0.51
CBA/J m 32.2 7.76   8 2.74 0.241 21.5, 46.0 -0.2
DBA/2J f 42.4 11.7   8 4.14 0.276 28.4, 54.7 0.34
DBA/2J m 32.5 9.44   8 3.34 0.29 22.7, 51.4 -0.19
FVB/NJ f 56.9 6.59   8 2.33 0.116 45.0, 65.6 0.86
FVB/NJ m 47.9 4.94   8 1.75 0.103 39.7, 54.3 0.37
KK/HlJ f 14.3 14.5   8 5.14 1.01 0.25, 33.7 -0.67
KK/HlJ m 28.2 7.09   8 2.51 0.251 21.7, 37.8 -0.34
LP/J f 3.84 2.78   8 0.983 0.723 1.3, 8.83 -1.05
LP/J m 2.25 1.74   8 0.616 0.775 0.77, 4.82 -1.28
MOLF/EiJ f 0.0234 0.0216   7 0.00818 0.924 -1.19
MOLF/EiJ m 0.00275 0.00778   8 0.00275 2.83 -1.36
MRL/MpJ f 19.1 6.77   8 2.39 0.354 10.1, 28.0 -0.5
MRL/MpJ m 29.0 9.51   8 3.36 0.328 12.3, 41.1 -0.31
NOD.B10Sn-H2b/J f 65.1 6.69   9 2.23 0.103 55.4, 77.6 1.16
NOD.B10Sn-H2b/J m 58.7 3.85   7 1.45 0.0656 53.6, 64.0 0.76
NON/ShiLtJ f 10.0 2.53   8 0.896 0.254 5.6, 14.2 -0.83
NON/ShiLtJ m 1.79 0.733   8 0.259 0.409 0.62, 3.11 -1.3
NZO/HlLtJ f 61.0 6.77   8 2.39 0.111 46.6, 69.4 1.01
NZO/HlLtJ m 45.6 8.02   8 2.84 0.176 34.7, 54.6 0.29
NZW/LacJ f 1.28 1.03   8 0.363 0.801 0.38, 3.59 -1.14
NZW/LacJ m 2.98 1.2   8 0.423 0.402 0.66, 4.6 -1.26
P/J f 1.97 0.891   8 0.315 0.452 0.92, 3.66 -1.12
P/J m 89.3 1.97   8 0.695 0.022 85.8, 91.5 1.87
PL/J f 80.1 4.14   7 1.56 0.0517 71.3, 83.8 1.7
PL/J m 78.3 4.43   7 1.68 0.0566 73.5, 86.6 1.47
PWD/PhJ f 6.19 2.31   8 0.816 0.373 3.5, 10.6 -0.97
PWD/PhJ m 11.3 4.45   8 1.57 0.395 5.02, 16.1 -0.95
RIIIS/J f 64.9 8.54   8 3.02 0.131 47.6, 74.7 1.15
RIIIS/J m 22.7 5.0   8 1.77 0.221 16.1, 30.3 -0.54
SJL/J f 17.1 5.13   8 1.81 0.3 12.0, 27.1 -0.57
SJL/J m 76.3 9.41   6 3.84 0.123 59.6, 85.5 1.4
SM/J f 60.0 13.0   16 3.26 0.217 31.7, 78.1 0.97
SM/J m 56.4 4.43   8 1.57 0.0786 52.0, 66.3 0.68
SWR/J f 1.54 1.98   8 0.699 1.28 0.25, 6.33 -1.13
SWR/J m 0.994 0.738   8 0.261 0.742 0.17, 2.49 -1.33
WSB/EiJ f 72.6 9.87   8 3.49 0.136 58.2, 85.1 1.43
WSB/EiJ m 62.9 16.2   6 6.63 0.258 32.2, 76.9 0.91


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 2.9937 2.8792 8.6526 0.0
129S1/SvImJ m 3.8287 2.8792 9.4876 0.0
A/J f 3.255 2.8792 8.9139 0.0
A/J m 3.0038 2.8792 8.6626 0.0
AKR/J f 31.375 2.8792 37.0339 25.7161
AKR/J m 31.7875 2.8792 37.4464 26.1286
BALB/cByJ f 0.7125 2.8792 6.3714 0.0
BALB/cByJ m 63.3425 2.8792 69.0014 57.6836
BTBR T+ Itpr3tf/J f 65.925 2.8792 71.5839 60.2661
BTBR T+ Itpr3tf/J m 67.4375 2.8792 73.0964 61.7786
BUB/BnJ f 5.7738 2.8792 11.4326 0.1149
BUB/BnJ m 3.3138 2.8792 8.9726 0.0
C3H/HeJ f 53.075 2.8792 58.7339 47.4161
C3H/HeJ m 55.45 2.8792 61.1089 49.7911
C57BL/10J f 45.4875 2.8792 51.1464 39.8286
C57BL/10J m 55.8125 2.8792 61.4714 50.1536
C57BL/6J f 64.875 2.8792 70.5339 59.2161
C57BL/6J m 59.05 2.8792 64.7089 53.3911
C57BLKS/J f 74.8125 2.8792 80.4714 69.1536
C57BLKS/J m 74.7875 2.8792 80.4464 69.1286
C57BR/cdJ f 10.7163 2.8792 16.3751 5.0574
C57BR/cdJ m 25.0 2.8792 30.6589 19.3411
C57L/J f 46.5875 2.8792 52.2464 40.9286
C57L/J m 45.2375 2.8792 50.8964 39.5786
CBA/J f 47.15 2.8792 52.8089 41.4911
CBA/J m 32.2375 2.8792 37.8964 26.5786
DBA/2J f 42.4 2.8792 48.0589 36.7411
DBA/2J m 32.525 2.8792 38.1839 26.8661
FVB/NJ f 56.9375 2.8792 62.5964 51.2786
FVB/NJ m 47.9125 2.8792 53.5714 42.2536
KK/HlJ f 14.3475 2.8792 20.0064 8.6886
KK/HlJ m 28.2375 2.8792 33.8964 22.5786
LP/J f 3.8425 2.8792 9.5014 0.0
LP/J m 2.2475 2.8792 7.9064 0.0
MOLF/EiJ f 0.0234 3.078 6.073 0.0
MOLF/EiJ m 0.0027 2.8792 5.6616 0.0
MRL/MpJ f 19.15 2.8792 24.8089 13.4911
MRL/MpJ m 28.9625 2.8792 34.6214 23.3036
NOD.B10Sn-H2b/J f 65.1444 2.7145 70.4797 59.8092
NOD.B10Sn-H2b/J m 58.6714 3.078 64.721 52.6219
NON/ShiLtJ f 9.9975 2.8792 15.6564 4.3386
NON/ShiLtJ m 1.7925 2.8792 7.4514 0.0
NZO/HlLtJ f 60.9875 2.8792 66.6464 55.3286
NZO/HlLtJ m 45.575 2.8792 51.2339 39.9161
NZW/LacJ f 1.2813 2.8792 6.9401 0.0
NZW/LacJ m 2.9812 2.8792 8.6401 0.0
P/J f 1.9725 2.8792 7.6314 0.0
P/J m 89.275 2.8792 94.9339 83.6161
PL/J f 80.0714 3.078 86.121 74.0219
PL/J m 78.2857 3.078 84.3353 72.2361
PWD/PhJ f 6.195 2.8792 11.8539 0.5361
PWD/PhJ m 11.2888 2.8792 16.9476 5.6299
RIIIS/J f 64.9375 2.8792 70.5964 59.2786
RIIIS/J m 22.65 2.8792 28.3089 16.9911
SJL/J f 17.1 2.8792 22.7589 11.4411
SJL/J m 76.3 3.3246 82.8343 69.7657
SM/J f 59.95 2.0359 63.9514 55.9486
SM/J m 56.3875 2.8792 62.0464 50.7286
SWR/J f 1.5438 2.8792 7.2026 0.0
SWR/J m 0.9938 2.8792 6.6526 0.0
WSB/EiJ f 72.6375 2.8792 78.2964 66.9786
WSB/EiJ m 62.95 3.3246 69.4843 56.4157


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.4112 2.0359 7.4127 0.0
A/J both 3.1294 2.0359 7.1308 0.0
AKR/J both 31.5813 2.0359 35.5827 27.5798
BALB/cByJ both 32.0275 2.0359 36.0289 28.0261
BTBR T+ Itpr3tf/J both 66.6812 2.0359 70.6827 62.6798
BUB/BnJ both 4.5438 2.0359 8.5452 0.5423
C3H/HeJ both 54.2625 2.0359 58.2639 50.2611
C57BL/10J both 50.65 2.0359 54.6514 46.6486
C57BL/6J both 61.9625 2.0359 65.9639 57.9611
C57BLKS/J both 74.8 2.0359 78.8014 70.7986
C57BR/cdJ both 17.8581 2.0359 21.8595 13.8567
C57L/J both 45.9125 2.0359 49.9139 41.9111
CBA/J both 39.6938 2.0359 43.6952 35.6923
DBA/2J both 37.4625 2.0359 41.4639 33.4611
FVB/NJ both 52.425 2.0359 56.4264 48.4236
KK/HlJ both 21.2925 2.0359 25.2939 17.2911
LP/J both 3.045 2.0359 7.0464 0.0
MOLF/EiJ both 0.0131 2.1074 4.1549 0.0
MRL/MpJ both 24.0563 2.0359 28.0577 20.0548
NOD.B10Sn-H2b/J both 61.9079 2.052 65.941 57.8749
NON/ShiLtJ both 5.895 2.0359 9.8964 1.8936
NZO/HlLtJ both 53.2813 2.0359 57.2827 49.2798
NZW/LacJ both 2.1312 2.0359 6.1327 0.0
P/J both 45.6237 2.0359 49.6252 41.6223
PL/J both 79.1786 2.1765 83.4563 74.9009
PWD/PhJ both 8.7419 2.0359 12.7433 4.7405
RIIIS/J both 43.7938 2.0359 47.7952 39.7923
SJL/J both 46.7 2.199 51.022 42.378
SM/J both 58.1687 1.7631 61.6341 54.7034
SWR/J both 1.2688 2.0359 5.2702 0.0
WSB/EiJ both 67.7937 2.199 72.1158 63.4717




  GWAS USING LINEAR MIXED MODELS