Project measure / variable:   Jaxpheno2   pct_kidney_R8

ID, description, units MPD:22736   pct_kidney_R8   kidney (right) weight, as percentage of body weight   [%]  at age 8wks  
Data set, strains Jaxpheno2   inbred   11 strains     sex: both     age: 8wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - kidney (right) weight, as percentage of body weight at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means0.638   % 0.735   %
Median of the strain means0.603   % 0.718   %
SD of the strain means± 0.0965 ± 0.0791
Coefficient of variation (CV)0.151 0.108
Min–max range of strain means0.556   –   0.901   % 0.611   –   0.850   %
Mean sample size per strain7.9   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2351 0.2351 1.6713 0.1978
strain 10 0.4787 0.0479 0.3403 0.9688
sex:strain 10 1.2497 0.125 0.8883 0.5454
Residuals 169 23.7758 0.1407


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 0.556 0.0351   5 0.0157 0.0631 0.52, 0.61 -0.85
B6.129P2-Apoetm1Unc/J m 0.616 0.0351   5 0.0157 0.0569 0.58, 0.67 -1.5
B6D2F1/J f 0.583 0.0497   6 0.0203 0.0851 0.52, 0.64 -0.57
B6D2F1/J m 0.71 0.0374   5 0.0167 0.0527 0.66, 0.74 -0.32
BALB/cByJ f 0.687 0.0226   10 0.00716 0.0329 0.66, 0.72 0.51
BALB/cByJ m 0.804 0.0486   10 0.0154 0.0604 0.71, 0.88 0.87
BALB/cJ f 0.623 0.0512   10 0.0162 0.0822 0.55, 0.7 -0.16
BALB/cJ m 0.781 0.0465   10 0.0147 0.0596 0.71, 0.86 0.58
C3H/HeJ f 0.654 0.0451   5 0.0201 0.0689 0.62, 0.73 0.16
C3H/HeJ m 0.85 0.06   5 0.0268 0.0706 0.76, 0.92 1.45
C57BL/6J f 0.901 1.28   15 0.33 1.42 0.48, 5.52 2.72
C57BL/6J m 0.611 0.0409   15 0.0105 0.0668 0.55, 0.68 -1.57
CBA/J f 0.578 0.0339   10 0.0107 0.0587 0.52, 0.64 -0.62
CBA/J m 0.803 0.0805   15 0.0208 0.1 0.7, 1.03 0.86
DBA/2J f 0.603 0.102   10 0.0324 0.17 0.51, 0.88 -0.36
DBA/2J m 0.718 0.0992   15 0.0256 0.138 0.55, 0.88 -0.21
FVB/NJ f 0.666 0.027   5 0.0121 0.0406 0.63, 0.7 0.29
FVB/NJ m 0.798 0.0349   5 0.0156 0.0438 0.76, 0.83 0.8
NOD.CB17-Prkdcscid/J f 0.578 0.0277   5 0.0124 0.048 0.53, 0.6 -0.62
NOD.CB17-Prkdcscid/J m 0.714 0.0207   5 0.00927 0.029 0.69, 0.74 -0.27
NOD/ShiLtJ f 0.591 0.0378   10 0.012 0.064 0.52, 0.66 -0.49
NOD/ShiLtJ m 0.68 0.207   10 0.0656 0.305 0.1, 0.81 -0.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 0.556 0.1677 0.8871 0.2249
B6.129P2-Apoetm1Unc/J m 0.616 0.1677 0.9471 0.2849
B6D2F1/J f 0.5833 0.1531 0.8856 0.281
B6D2F1/J m 0.71 0.1677 1.0411 0.3789
BALB/cByJ f 0.687 0.1186 0.9211 0.4529
BALB/cByJ m 0.804 0.1186 1.0381 0.5699
BALB/cJ f 0.623 0.1186 0.8571 0.3889
BALB/cJ m 0.781 0.1186 1.0151 0.5469
C3H/HeJ f 0.654 0.1677 0.9851 0.3229
C3H/HeJ m 0.85 0.1677 1.1811 0.5189
C57BL/6J f 0.9013 0.0968 1.0925 0.7102
C57BL/6J m 0.6113 0.0968 0.8025 0.4202
CBA/J f 0.578 0.1186 0.8121 0.3439
CBA/J m 0.8033 0.0968 0.9945 0.6122
DBA/2J f 0.603 0.1186 0.8371 0.3689
DBA/2J m 0.718 0.0968 0.9092 0.5268
FVB/NJ f 0.666 0.1677 0.9971 0.3349
FVB/NJ m 0.798 0.1677 1.1291 0.4669
NOD.CB17-Prkdcscid/J f 0.578 0.1677 0.9091 0.2469
NOD.CB17-Prkdcscid/J m 0.714 0.1677 1.0451 0.3829
NOD/ShiLtJ f 0.591 0.1186 0.8251 0.3569
NOD/ShiLtJ m 0.68 0.1186 0.9141 0.4459


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 0.586 0.1186 0.8201 0.3519
B6D2F1/J both 0.6467 0.1136 0.8708 0.4225
BALB/cByJ both 0.7455 0.0839 0.9111 0.5799
BALB/cJ both 0.702 0.0839 0.8676 0.5364
C3H/HeJ both 0.752 0.1186 0.9861 0.5179
C57BL/6J both 0.7563 0.0685 0.8915 0.6211
CBA/J both 0.6907 0.0766 0.8418 0.5395
DBA/2J both 0.6605 0.0766 0.8116 0.5094
FVB/NJ both 0.732 0.1186 0.9661 0.4979
NOD.CB17-Prkdcscid/J both 0.646 0.1186 0.8801 0.4119
NOD/ShiLtJ both 0.6355 0.0839 0.8011 0.4699




  GWAS USING LINEAR MIXED MODELS