Project measure / variable:   Jaxpheno2   pct_kidney_L16

ID, description, units MPD:22735   pct_kidney_L16   kidney (left) weight, as percentage of body weight   [%]  at age 16wks  
Data set, strains Jaxpheno2   inbred   9 strains     sex: both     age: 16wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - kidney (left) weight, as percentage of body weight at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.583   % 0.759   %
Median of the strain means0.600   % 0.788   %
SD of the strain means± 0.0646 ± 0.112
Coefficient of variation (CV)0.111 0.148
Min–max range of strain means0.485   –   0.692   % 0.537   –   0.870   %
Mean sample size per strain7.1   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.827 0.827 113.2625 < 0.0001
strain 8 1.1065 0.1383 18.9423 < 0.0001
sex:strain 8 0.2572 0.0321 4.4021 0.0001
Residuals 121 0.8835 0.0073


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.53 0.0483   4 0.0242 0.0911 0.46, 0.57 -0.81
B6D2F1/J m 0.7 0.06   5 0.0268 0.0857 0.61, 0.77 -0.53
BALB/cByJ f 0.63 0.0408   10 0.0129 0.0648 0.54, 0.68 0.73
BALB/cByJ m 0.855 0.0712   10 0.0225 0.0833 0.74, 0.96 0.85
C3H/HeJ f 0.6 0.0412   5 0.0184 0.0687 0.53, 0.63 0.27
C3H/HeJ m 0.788 0.0931   5 0.0416 0.118 0.67, 0.92 0.25
C57BL/6J f 0.535 0.0387   15 0.00999 0.0724 0.48, 0.61 -0.74
C57BL/6J m 0.537 0.0498   15 0.0129 0.0926 0.46, 0.6 -1.98
CBA/J f 0.485 0.158   10 0.0501 0.327 0.05, 0.59 -1.51
CBA/J m 0.686 0.0395   10 0.0125 0.0576 0.62, 0.75 -0.66
DBA/2J f 0.628 0.0444   5 0.0198 0.0707 0.57, 0.68 0.7
DBA/2J m 0.87 0.0632   5 0.0283 0.0727 0.8, 0.96 0.99
FVB/NJ f 0.604 0.0114   5 0.0051 0.0189 0.59, 0.62 0.33
FVB/NJ m 0.86 0.0418   5 0.0187 0.0486 0.81, 0.9 0.9
NOD.CB17-Prkdcscid/J f 0.54 0.0158   5 0.00707 0.0293 0.52, 0.56 -0.66
NOD.CB17-Prkdcscid/J m 0.7 0.0579   5 0.0259 0.0827 0.61, 0.76 -0.53
NOD/ShiLtJ f 0.692 0.157   10 0.0495 0.226 0.56, 1.03 1.69
NOD/ShiLtJ m 0.839 0.148   10 0.0469 0.177 0.69, 1.12 0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.53 0.0427 0.6146 0.4454
B6D2F1/J m 0.7 0.0382 0.7757 0.6243
BALB/cByJ f 0.63 0.027 0.6835 0.5765
BALB/cByJ m 0.855 0.027 0.9085 0.8015
C3H/HeJ f 0.6 0.0382 0.6757 0.5243
C3H/HeJ m 0.788 0.0382 0.8637 0.7123
C57BL/6J f 0.5347 0.0221 0.5783 0.491
C57BL/6J m 0.5373 0.0221 0.581 0.4937
CBA/J f 0.485 0.027 0.5385 0.4315
CBA/J m 0.686 0.027 0.7395 0.6325
DBA/2J f 0.628 0.0382 0.7037 0.5523
DBA/2J m 0.87 0.0382 0.9457 0.7943
FVB/NJ f 0.604 0.0382 0.6797 0.5283
FVB/NJ m 0.86 0.0382 0.9357 0.7843
NOD.CB17-Prkdcscid/J f 0.54 0.0382 0.6157 0.4643
NOD.CB17-Prkdcscid/J m 0.7 0.0382 0.7757 0.6243
NOD/ShiLtJ f 0.692 0.027 0.7455 0.6385
NOD/ShiLtJ m 0.839 0.027 0.8925 0.7855


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 0.615 0.0287 0.6717 0.5583
BALB/cByJ both 0.7425 0.0191 0.7803 0.7047
C3H/HeJ both 0.694 0.027 0.7475 0.6405
C57BL/6J both 0.536 0.0156 0.5669 0.5051
CBA/J both 0.5855 0.0191 0.6233 0.5477
DBA/2J both 0.749 0.027 0.8025 0.6955
FVB/NJ both 0.732 0.027 0.7855 0.6785
NOD.CB17-Prkdcscid/J both 0.62 0.027 0.6735 0.5665
NOD/ShiLtJ both 0.7655 0.0191 0.8033 0.7277




  GWAS USING LINEAR MIXED MODELS