Project measure / variable:   Jaxpheno2   pct_heart16

ID, description, units MPD:22713   pct_heart16   heart weight as percentage of body weight   [%]  at age 16wks  
Data set, strains Jaxpheno2   inbred   9 strains     sex: both     age: 16wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - heart weight as percentage of body weight at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.511   % 0.528   %
Median of the strain means0.496   % 0.508   %
SD of the strain means± 0.0776 ± 0.0712
Coefficient of variation (CV)0.152 0.135
Min–max range of strain means0.442   –   0.663   % 0.450   –   0.658   %
Mean sample size per strain7.1   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0027 0.0027 0.5164 0.4738
strain 8 0.8371 0.1046 19.9145 < 0.0001
sex:strain 8 0.0477 0.006 1.1352 0.3447
Residuals 121 0.6358 0.0053


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.568 0.0665   4 0.0333 0.117 0.47, 0.62 0.74
B6D2F1/J m 0.538 0.0698   5 0.0312 0.13 0.47, 0.65 0.15
BALB/cByJ f 0.501 0.036   10 0.0114 0.0719 0.44, 0.58 -0.12
BALB/cByJ m 0.496 0.0347   10 0.011 0.07 0.42, 0.55 -0.44
C3H/HeJ f 0.442 0.0303   5 0.0136 0.0686 0.4, 0.47 -0.88
C3H/HeJ m 0.462 0.0526   5 0.0235 0.114 0.4, 0.54 -0.92
C57BL/6J f 0.663 0.081   15 0.0209 0.122 0.53, 0.79 1.96
C57BL/6J m 0.658 0.0905   15 0.0234 0.138 0.45, 0.81 1.83
CBA/J f 0.445 0.0324   10 0.0102 0.0728 0.41, 0.49 -0.85
CBA/J m 0.45 0.0624   10 0.0197 0.139 0.37, 0.55 -1.09
DBA/2J f 0.496 0.0288   5 0.0129 0.0581 0.46, 0.54 -0.19
DBA/2J m 0.614 0.0789   5 0.0353 0.129 0.53, 0.71 1.21
FVB/NJ f 0.454 0.0472   5 0.0211 0.104 0.41, 0.52 -0.73
FVB/NJ m 0.508 0.0672   5 0.0301 0.132 0.46, 0.62 -0.27
NOD.CB17-Prkdcscid/J f 0.446 0.0297   5 0.0133 0.0665 0.41, 0.49 -0.83
NOD.CB17-Prkdcscid/J m 0.468 0.037   5 0.0166 0.0791 0.42, 0.51 -0.84
NOD/ShiLtJ f 0.581 0.123   10 0.0387 0.211 0.43, 0.73 0.91
NOD/ShiLtJ m 0.554 0.113   10 0.0358 0.204 0.42, 0.76 0.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.5675 0.0362 0.6393 0.4957
B6D2F1/J m 0.538 0.0324 0.6022 0.4738
BALB/cByJ f 0.501 0.0229 0.5464 0.4556
BALB/cByJ m 0.496 0.0229 0.5414 0.4506
C3H/HeJ f 0.442 0.0324 0.5062 0.3778
C3H/HeJ m 0.462 0.0324 0.5262 0.3978
C57BL/6J f 0.6627 0.0187 0.6997 0.6256
C57BL/6J m 0.658 0.0187 0.6951 0.6209
CBA/J f 0.445 0.0229 0.4904 0.3996
CBA/J m 0.45 0.0229 0.4954 0.4046
DBA/2J f 0.496 0.0324 0.5602 0.4318
DBA/2J m 0.614 0.0324 0.6782 0.5498
FVB/NJ f 0.454 0.0324 0.5182 0.3898
FVB/NJ m 0.508 0.0324 0.5722 0.4438
NOD.CB17-Prkdcscid/J f 0.446 0.0324 0.5102 0.3818
NOD.CB17-Prkdcscid/J m 0.468 0.0324 0.5322 0.4038
NOD/ShiLtJ f 0.581 0.0229 0.6264 0.5356
NOD/ShiLtJ m 0.554 0.0229 0.5994 0.5086


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 0.5528 0.0243 0.6009 0.5046
BALB/cByJ both 0.4985 0.0162 0.5306 0.4664
C3H/HeJ both 0.452 0.0229 0.4974 0.4066
C57BL/6J both 0.6603 0.0132 0.6865 0.6341
CBA/J both 0.4475 0.0162 0.4796 0.4154
DBA/2J both 0.555 0.0229 0.6004 0.5096
FVB/NJ both 0.481 0.0229 0.5264 0.4356
NOD.CB17-Prkdcscid/J both 0.457 0.0229 0.5024 0.4116
NOD/ShiLtJ both 0.5675 0.0162 0.5996 0.5354




  GWAS USING LINEAR MIXED MODELS