Project measure / variable:   Jaxpheno2   heart8

ID, description, units MPD:22710   heart8   heart weight   [g]  at age 8wks  
Data set, strains Jaxpheno2   inbred   11 strains     sex: both     age: 8wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - heart weight at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means0.113   g 0.142   g
Median of the strain means0.109   g 0.139   g
SD of the strain means± 0.0224 ± 0.0243
Coefficient of variation (CV)0.198 0.171
Min–max range of strain means0.0915   –   0.162   g 0.111   –   0.186   g
Mean sample size per strain7.9   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0351 0.0351 4.1985 0.042
strain 10 0.0504 0.005 0.6022 0.8106
sex:strain 10 0.0465 0.0046 0.5557 0.848
Residuals 169 1.4136 0.0084


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 0.0915 0.00287   5 0.00128 0.0313 0.0886, 0.0954 -0.97
B6.129P2-Apoetm1Unc/J m 0.134 0.0241   5 0.0108 0.181 0.115, 0.175 -0.33
B6D2F1/J f 0.14 0.0244   6 0.00996 0.174 0.122, 0.189 1.19
B6D2F1/J m 0.181 0.015   5 0.00671 0.0827 0.162, 0.201 1.6
BALB/cByJ f 0.109 0.0151   10 0.00479 0.139 0.0929, 0.134 -0.19
BALB/cByJ m 0.127 0.012   10 0.0038 0.0947 0.108, 0.142 -0.62
BALB/cJ f 0.162 0.233   10 0.0738 1.44 0.0801, 0.826 2.17
BALB/cJ m 0.115 0.0111   10 0.0035 0.096 0.101, 0.14 -1.11
C3H/HeJ f 0.0953 0.0129   5 0.00577 0.135 0.0859, 0.117 -0.8
C3H/HeJ m 0.111 0.0122   5 0.00544 0.109 0.0942, 0.126 -1.28
C57BL/6J f 0.109 0.0225   15 0.00581 0.207 0.0835, 0.175 -0.19
C57BL/6J m 0.151 0.0253   15 0.00654 0.168 0.115, 0.202 0.37
CBA/J f 0.102 0.011   10 0.00349 0.108 0.0909, 0.123 -0.51
CBA/J m 0.124 0.0142   15 0.00366 0.114 0.106, 0.149 -0.74
DBA/2J f 0.117 0.0139   10 0.0044 0.119 0.0943, 0.142 0.16
DBA/2J m 0.186 0.25   15 0.0646 1.35 0.11, 1.09 1.81
FVB/NJ f 0.0949 0.00828   5 0.0037 0.0873 0.0892, 0.109 -0.82
FVB/NJ m 0.145 0.0105   5 0.00468 0.0722 0.128, 0.155 0.12
NOD.CB17-Prkdcscid/J f 0.0953 0.00839   5 0.00375 0.0881 0.0903, 0.11 -0.8
NOD.CB17-Prkdcscid/J m 0.149 0.0154   5 0.00687 0.103 0.13, 0.166 0.29
NOD/ShiLtJ f 0.131 0.029   10 0.00918 0.221 0.0998, 0.177 0.79
NOD/ShiLtJ m 0.139 0.0204   10 0.00646 0.147 0.115, 0.182 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 0.0915 0.0409 0.1722 0.0107
B6.129P2-Apoetm1Unc/J m 0.1336 0.0409 0.2143 0.0529
B6D2F1/J f 0.1402 0.0373 0.2139 0.0665
B6D2F1/J m 0.1814 0.0409 0.2621 0.1007
BALB/cByJ f 0.1086 0.0289 0.1657 0.0515
BALB/cByJ m 0.1269 0.0289 0.184 0.0698
BALB/cJ f 0.1623 0.0289 0.2194 0.1052
BALB/cJ m 0.1152 0.0289 0.1723 0.0581
C3H/HeJ f 0.0953 0.0409 0.1761 0.0146
C3H/HeJ m 0.1114 0.0409 0.1922 0.0307
C57BL/6J f 0.1087 0.0236 0.1553 0.0621
C57BL/6J m 0.151 0.0236 0.1976 0.1044
CBA/J f 0.1023 0.0289 0.1594 0.0452
CBA/J m 0.1245 0.0236 0.1711 0.0779
DBA/2J f 0.1169 0.0289 0.174 0.0598
DBA/2J m 0.1856 0.0236 0.2322 0.139
FVB/NJ f 0.0949 0.0409 0.1756 0.0141
FVB/NJ m 0.145 0.0409 0.2257 0.0643
NOD.CB17-Prkdcscid/J f 0.0953 0.0409 0.176 0.0145
NOD.CB17-Prkdcscid/J m 0.1488 0.0409 0.2295 0.0681
NOD/ShiLtJ f 0.1315 0.0289 0.1886 0.0744
NOD/ShiLtJ m 0.1394 0.0289 0.1965 0.0823


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 0.1125 0.0289 0.1696 0.0554
B6D2F1/J both 0.1608 0.0277 0.2154 0.1061
BALB/cByJ both 0.1178 0.0205 0.1581 0.0774
BALB/cJ both 0.1387 0.0205 0.1791 0.0984
C3H/HeJ both 0.1034 0.0289 0.1605 0.0463
C57BL/6J both 0.1298 0.0167 0.1628 0.0969
CBA/J both 0.1134 0.0187 0.1502 0.0765
DBA/2J both 0.1513 0.0187 0.1881 0.1144
FVB/NJ both 0.1199 0.0289 0.177 0.0628
NOD.CB17-Prkdcscid/J both 0.122 0.0289 0.1791 0.0649
NOD/ShiLtJ both 0.1354 0.0205 0.1758 0.0951




  GWAS USING LINEAR MIXED MODELS