Project measure / variable:   Crabbe5   dist_base_D1

ID, description, units MPD:19601   dist_base_D1   distance traveled, 1.6mm rod, 6mm space   [cm]  control (day 1)  
ethanol study
Data set, strains Crabbe5   inbred   8 strains     sex: both     age: 8-10wks
Procedure parallel rod floor test
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  STRAIN COMPARISON PLOT
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Crabbe5 - distance traveled, 1.6mm rod, 6mm space control (day 1)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested7 strains8 strains
Mean of the strain means571   cm 715   cm
Median of the strain means675   cm 711   cm
SD of the strain means± 221 ± 299
Coefficient of variation (CV)0.388 0.418
Min–max range of strain means204   –   790   cm 262   –   1118   cm
Mean sample size per strain5.6   mice 5.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 190852.7519 190852.7519 1.582 0.2131
strain 6 3654570.5996 609095.0999 5.0488 0.0003
sex:strain 6 854291.2704 142381.8784 1.1802 0.3283
Residuals 63 7600462.1833 120642.2569


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 204.0 146.0   6 59.8 0.717 37.0, 405.0 -1.66
129S1/SvImJ m 472.0 139.0   5 62.0 0.294 337.0, 679.0 -0.81
A/J f 326.0 89.3   6 36.5 0.274 242.0, 478.0 -1.11
A/J m 262.0 53.1   6 21.7 0.203 171.0, 324.0 -1.51
BALB/cByJ f 675.0 312.0   3 180.0 0.462 390.0, 1008.0 0.47
BALB/cByJ m 1118.0 512.0   6 209.0 0.458 501.0, 1947.0 1.35
BTBR T+ Itpr3tf/J f 690.0 497.0   6 203.0 0.72 158.0, 1251.0 0.54
BTBR T+ Itpr3tf/J m 639.0 322.0   5 144.0 0.504 296.0, 1156.0 -0.26
C3H/HeJ f 732.0 259.0   6 106.0 0.354 341.0, 984.0 0.73
C3H/HeJ m 519.0 231.0   6 94.4 0.446 298.0, 954.0 -0.66
C57BL/6J f 578.0 300.0   6 123.0 0.519 268.0, 1088.0 0.03
C57BL/6J m 850.0 656.0   6 268.0 0.772 295.0, 2115.0 0.45
DBA/2J f 790.0 385.0   6 157.0 0.488 276.0, 1452.0 0.99
DBA/2J m 783.0 293.0   4 146.0 0.374 494.0, 1037.0 0.23
FVB/NJ m 1080.0 408.0   6 167.0 0.378 415.0, 1624.0 1.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 204.3333 141.7993 487.6966 0.0
129S1/SvImJ m 471.8 155.3334 782.2089 161.3911
A/J f 326.3333 141.7993 609.6966 42.97
A/J m 262.1667 141.7993 545.53 0.0
BALB/cByJ f 675.3333 200.5345 1076.0696 274.5971
BALB/cByJ m 1117.6667 141.7993 1401.03 834.3034
BTBR T+ Itpr3tf/J f 690.5 141.7993 973.8633 407.1367
BTBR T+ Itpr3tf/J m 638.8 155.3334 949.2089 328.3911
C3H/HeJ f 732.1667 141.7993 1015.53 448.8034
C3H/HeJ m 518.8333 141.7993 802.1966 235.47
C57BL/6J f 578.5 141.7993 861.8633 295.1367
C57BL/6J m 850.1667 141.7993 1133.53 566.8034
DBA/2J f 790.1667 141.7993 1073.53 506.8034
DBA/2J m 783.25 173.668 1130.2977 436.2023


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 338.0667 105.1612 548.2145 127.9188
A/J both 294.25 100.2672 494.6181 93.8819
BALB/cByJ both 896.5 122.8018 1141.8998 651.1002
BTBR T+ Itpr3tf/J both 664.65 105.1612 874.7978 454.5022
C3H/HeJ both 625.5 100.2672 825.8681 425.1319
C57BL/6J both 714.3333 100.2672 914.7014 513.9652
DBA/2J both 786.7083 112.1022 1010.7267 562.69




  GWAS USING LINEAR MIXED MODELS