Phenotype measure:   Richfield1   horiz_short_habit

ID, description, units MPD:14513   horiz_short_habit   short-term habituation, change in horizontal activity over 45min, day 3   [n/min]
Data set, strains Richfield1   inbred   15 strains     sex: m     age: 7-9wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Richfield1 - short-term habituation, change in horizontal activity over 45min, day 3



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested15 strains
Mean of the strain means-4.61   n/min
Median of the strain means-4.95   n/min
SD of the strain means± 4.58
Coefficient of variation (CV)-0.992
Min–max range of strain means-10.7   –   3.74   n/min
Mean sample size per strain10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 14 2941.2498 210.0893 9.5817 < 0.0001
Residuals 144 3157.3419 21.926


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m -1.61 1.56   10 0.493 -0.966 -4.6, 1.56 0.66
A/HeJ m 0.361 2.26   10 0.713 6.25 -3.45, 4.55 1.09
A/J m -0.471 2.7   10 0.854 -5.73 -6.41, 2.8 0.9
AKR/J m -6.72 4.95   10 1.57 -0.737 -14.1, 2.91 -0.46
B10.D2-Hc0 m -3.4 4.34   10 1.37 -1.28 -13.6, 1.17 0.26
BALB/cByJ m 3.74 4.79   10 1.51 1.28 -3.9, 11.8 1.82
BALB/cJ m 1.29 4.8   10 1.52 3.73 -6.91, 8.89 1.29
C3H/HeJ m -9.87 4.57   10 1.44 -0.463 -17.7, -3.55 -1.15
C57BL/6J m -5.63 6.81   20 1.52 -1.21 -23.1, 4.43 -0.22
CAST/EiJ m -10.1 4.56   10 1.44 -0.449 -17.9, -1.14 -1.2
DBA/2J m -4.95 3.96   10 1.25 -0.8 -11.4, 1.18 -0.07
MRL/MpJ m -7.78 4.89   10 1.55 -0.629 -16.1, -1.38 -0.69
NZB/BlNJ m -9.61 3.45   10 1.09 -0.359 -15.8, -3.87 -1.09
NZW/LacJ m -10.7 6.65   10 2.1 -0.623 -24.7, -2.3 -1.33
SPRET/EiJ m -3.72 3.55   9 1.18 -0.955 -7.74, 4.11 0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m -1.614 1.4807 1.3128 -4.5408
A/HeJ m 0.361 1.4807 3.2878 -2.5658
A/J m -0.471 1.4807 2.4558 -3.3978
AKR/J m -6.718 1.4807 -3.7912 -9.6448
B10.D2-Hc0 m -3.402 1.4807 -0.4752 -6.3288
BALB/cByJ m 3.738 1.4807 6.6648 0.8112
BALB/cJ m 1.288 1.4807 4.2148 -1.6388
C3H/HeJ m -9.867 1.4807 -6.9402 -12.7938
C57BL/6J m -5.634 1.047 -3.5644 -7.7036
CAST/EiJ m -10.14 1.4807 -7.2132 -13.0668
DBA/2J m -4.952 1.4807 -2.0252 -7.8788
MRL/MpJ m -7.781 1.4807 -4.8542 -10.7078
NZB/BlNJ m -9.613 1.4807 -6.6862 -12.5398
NZW/LacJ m -10.675 1.4807 -7.7482 -13.6018
SPRET/EiJ m -3.72 1.5608 -0.6349 -6.8051




  GWAS USING LINEAR MIXED MODELS