Project measure / variable:   Richfield1   amb1

ID, description, units MPD:14504   amb1   ambulatory activity counts, 45 min test   [n]  day1  
Data set, strains Richfield1   inbred   15 strains     sex: m     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Richfield1 - ambulatory activity counts, 45 min test day1



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested15 strains
Mean of the strain means4063   n
Median of the strain means2925   n
SD of the strain means± 2354
Coefficient of variation (CV)0.579
Min–max range of strain means1442   –   9483   n
Mean sample size per strain10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 14 1044991050.3871 74642217.8848 39.7447 < 0.0001
Residuals 144 270438281.55 1878043.6219


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1453.0 891.0   10 282.0 0.614 468.0, 3052.0 -1.11
A/HeJ m 2612.0 1207.0   10 382.0 0.462 1018.0, 4809.0 -0.62
A/J m 1442.0 652.0   10 206.0 0.452 354.0, 2686.0 -1.11
AKR/J m 5242.0 1673.0   10 529.0 0.319 3119.0, 7847.0 0.5
B10.D2-Hc0 m 7492.0 1467.0   10 464.0 0.196 4965.0, 10266.0 1.46
BALB/cByJ m 4778.0 2007.0   10 635.0 0.42 2269.0, 8427.0 0.3
BALB/cJ m 2925.0 1583.0   10 500.0 0.541 529.0, 5351.0 -0.48
C3H/HeJ m 2627.0 501.0   10 159.0 0.191 1455.0, 3143.0 -0.61
C57BL/6J m 9483.0 1924.0   20 430.0 0.203 6031.0, 14317.0 2.3
CAST/EiJ m 6518.0 1308.0   10 414.0 0.201 4613.0, 8720.0 1.04
DBA/2J m 2458.0 1091.0   10 345.0 0.444 989.0, 4342.0 -0.68
MRL/MpJ m 4964.0 1400.0   10 443.0 0.282 2344.0, 6845.0 0.38
NZB/BlNJ m 2844.0 1052.0   10 333.0 0.37 1667.0, 5061.0 -0.52
NZW/LacJ m 4158.0 1010.0   10 319.0 0.243 2792.0, 5602.0 0.04
SPRET/EiJ m 1946.0 970.0   9 323.0 0.498 1067.0, 4294.0 -0.9


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ m 1452.9 433.364 2309.4765 596.3235
A/HeJ m 2612.3 433.364 3468.8765 1755.7235
A/J m 1441.8 433.364 2298.3765 585.2235
AKR/J m 5241.5 433.364 6098.0765 4384.9235
B10.D2-Hc0 m 7491.9 433.364 8348.4765 6635.3235
BALB/cByJ m 4777.5 433.364 5634.0765 3920.9235
BALB/cJ m 2924.9 433.364 3781.4765 2068.3235
C3H/HeJ m 2627.4 433.364 3483.9765 1770.8235
C57BL/6J m 9482.85 306.4346 10088.541 8877.159
CAST/EiJ m 6517.6 433.364 7374.1765 5661.0235
DBA/2J m 2458.1 433.364 3314.6765 1601.5235
MRL/MpJ m 4963.9 433.364 5820.4765 4107.3235
NZB/BlNJ m 2843.7 433.364 3700.2765 1987.1235
NZW/LacJ m 4158.1 433.364 5014.6765 3301.5235
SPRET/EiJ m 1946.3333 456.8058 2849.2442 1043.4224




  GWAS USING LINEAR MIXED MODELS