Project measure / variable:   Flaherty1   open4

ID, description, units MPD:11812   open4   duration in open quadrants   [s]  q4  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - duration in open quadrants q4



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means28.5   s 27.0   s
Median of the strain means18.8   s 19.1   s
SD of the strain means± 18.6 ± 17.4
Coefficient of variation (CV)0.655 0.644
Min–max range of strain means10.7   –   59.7   s 10.3   –   52.9   s
Mean sample size per strain19.9   mice 19.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 192.538 192.538 0.4474 0.5041
strain 7 89300.5789 12757.2256 29.6441 < 0.0001
sex:strain 7 593.3035 84.7576 0.197 0.986
Residuals 301 129534.012 430.3456


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 14.7 32.1   20 7.17 2.18 -0.74
129S1/SvImJ m 10.3 9.48   20 2.12 0.924 -0.96
A/J f 10.7 16.7   20 3.72 1.56 -0.95
A/J m 11.4 13.9   20 3.12 1.22 -0.9
BALB/cByJ f 16.0 26.2   20 5.85 1.63 -0.67
BALB/cByJ m 17.7 18.6   20 4.17 1.06 -0.54
C3H/HeJ f 59.7 31.0   20 6.94 0.52 10.3, 127.0 1.68
C3H/HeJ m 52.9 25.7   19 5.9 0.486 1.49
C57BL/6J f 21.6 9.99   20 2.23 0.463 4.6, 37.8 -0.37
C57BL/6J m 20.6 10.6   20 2.37 0.514 1.3, 43.0 -0.37
CBA/J f 42.5 28.0   20 6.25 0.658 0.2, 87.2 0.75
CBA/J m 40.3 29.3   19 6.71 0.726 0.76
DBA/2J f 14.8 15.5   20 3.48 1.05 -0.73
DBA/2J m 14.4 10.5   20 2.35 0.73 -0.72
FVB/NJ f 47.6 17.6   19 4.03 0.369 22.2, 76.1 1.03
FVB/NJ m 48.6 12.5   20 2.8 0.257 11.9, 69.1 1.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 14.735 4.6387 23.8633 5.6067
129S1/SvImJ m 10.26 4.6387 19.3883 1.1317
A/J f 10.655 4.6387 19.7833 1.5267
A/J m 11.395 4.6387 20.5233 2.2667
BALB/cByJ f 16.025 4.6387 25.1533 6.8967
BALB/cByJ m 17.67 4.6387 26.7983 8.5417
C3H/HeJ f 59.67 4.6387 68.7983 50.5417
C3H/HeJ m 52.8737 4.7592 62.2392 43.5082
C57BL/6J f 21.59 4.6387 30.7183 12.4617
C57BL/6J m 20.605 4.6387 29.7333 11.4767
CBA/J f 42.495 4.6387 51.6233 33.3667
CBA/J m 40.2842 4.7592 49.6497 30.9187
DBA/2J f 14.815 4.6387 23.9433 5.6867
DBA/2J m 14.385 4.6387 23.5133 5.2567
FVB/NJ f 47.5895 4.7592 56.9549 38.224
FVB/NJ m 48.65 4.6387 57.7783 39.5217


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 12.4975 3.28 18.9522 6.0428
A/J both 11.025 3.28 17.4797 4.5703
BALB/cByJ both 16.8475 3.28 23.3022 10.3928
C3H/HeJ both 56.2718 3.3229 62.8109 49.7328
C57BL/6J both 21.0975 3.28 27.5522 14.6428
CBA/J both 41.3896 3.3229 47.9287 34.8505
DBA/2J both 14.6 3.28 21.0547 8.1453
FVB/NJ both 48.1197 3.3229 54.6588 41.5807




  GWAS USING LINEAR MIXED MODELS