Project measure / variable:   Flaherty1   open2

ID, description, units MPD:11810   open2   duration in open quadrants   [s]  q2  
Data set, strains Flaherty1   inbred   8 strains     sex: both     age: 8-9wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Flaherty1 - duration in open quadrants q2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means25.7   s 23.2   s
Median of the strain means24.2   s 17.8   s
SD of the strain means± 13.8 ± 15.5
Coefficient of variation (CV)0.538 0.669
Min–max range of strain means5.62   –   46.8   s 7.39   –   54.5   s
Mean sample size per strain19.9   mice 19.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 488.7349 488.7349 0.8815 0.3485
strain 7 56255.0013 8036.4288 14.495 < 0.0001
sex:strain 7 3464.1345 494.8764 0.8926 0.5126
Residuals 301 166883.2081 554.4293


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 24.7 51.6   20 11.5 2.09 -0.07
129S1/SvImJ m 18.0 17.3   20 3.87 0.963 -0.33
A/J f 5.62 11.5   20 2.57 2.05 -1.45
A/J m 7.39 13.8   20 3.09 1.87 -1.02
BALB/cByJ f 22.4 45.6   20 10.2 2.03 -0.24
BALB/cByJ m 9.18 13.3   20 2.96 1.44 -0.9
C3H/HeJ f 36.8 21.8   20 4.87 0.591 5.2, 76.4 0.81
C3H/HeJ m 32.5 23.6   19 5.42 0.728 0.4, 85.7 0.6
C57BL/6J f 23.8 18.4   20 4.11 0.773 2.1, 73.9 -0.14
C57BL/6J m 17.6 7.53   20 1.68 0.429 1.3, 33.1 -0.36
CBA/J f 35.4 22.6   20 5.06 0.64 0.71
CBA/J m 30.4 24.0   19 5.5 0.787 0.47
DBA/2J f 9.82 7.64   20 1.71 0.778 -1.15
DBA/2J m 15.7 14.1   20 3.16 0.901 -0.48
FVB/NJ f 46.8 16.0   19 3.67 0.341 18.4, 72.1 1.53
FVB/NJ m 54.5 17.1   20 3.83 0.314 26.2, 100.0 2.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 24.675 5.2651 35.0361 14.3139
129S1/SvImJ m 17.955 5.2651 28.3161 7.5939
A/J f 5.625 5.2651 15.9861 0.0
A/J m 7.39 5.2651 17.7511 0.0
BALB/cByJ f 22.42 5.2651 32.7811 12.0589
BALB/cByJ m 9.18 5.2651 19.5411 0.0
C3H/HeJ f 36.81 5.2651 47.1711 26.4489
C3H/HeJ m 32.4632 5.4019 43.0934 21.8329
C57BL/6J f 23.75 5.2651 34.1111 13.3889
C57BL/6J m 17.565 5.2651 27.9261 7.2039
CBA/J f 35.4 5.2651 45.7611 25.0389
CBA/J m 30.4263 5.4019 41.0566 19.7961
DBA/2J f 9.82 5.2651 20.1811 0.0
DBA/2J m 15.695 5.2651 26.0561 5.3339
FVB/NJ f 46.8 5.4019 57.4303 36.1697
FVB/NJ m 54.535 5.2651 64.8961 44.1739


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 21.315 3.723 28.6414 13.9886
A/J both 6.5075 3.723 13.8339 0.0
BALB/cByJ both 15.8 3.723 23.1264 8.4736
C3H/HeJ both 34.6366 3.7717 42.0588 27.2144
C57BL/6J both 20.6575 3.723 27.9839 13.3311
CBA/J both 32.9132 3.7717 40.3353 25.491
DBA/2J both 12.7575 3.723 20.0839 5.4311
FVB/NJ both 50.6675 3.7717 58.0897 43.2453




  GWAS USING LINEAR MIXED MODELS