Project measure / variable:   Auwerx2   vert_act_night_CD

ID, description, units MPD:114629   vert_act_night_CD   vertical activity (beam breaks) at night, basal activity test, for 48h   [n/h]  CD  
Data set, strains Auwerx2   inbred w/CC8   9 strains     sex: both     age: 19wks
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  STRAIN COMPARISON PLOT
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Auwerx2 - vertical activity (beam breaks) at night, basal activity test, for 48h CD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means16323.0   n/h 12159.0   n/h
Median of the strain means13072.0   n/h 7153.0   n/h
SD of the strain means± 12248.0 ± 9620.0
Coefficient of variation (CV)0.7503 0.7912
Min–max range of strain means5745.0   –   44038.0   n/h 3859.0   –   33916.0   n/h
Mean sample size per strain4.3   mice 4.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 295680836.7613 295680836.7613 16.8126 0.0001
strain 7 2161544208.4416 308792029.7774 17.5581 < 0.0001
sex:strain 7 413301918.3523 59043131.1932 3.3572 0.0042
Residuals 62 1090387523.3167 17586895.5374


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6355.0 4010.0   5 1794.0 0.6311 3662.0, 13427.0 -0.81
129S1/SvImJ m 4502.0 4705.0   5 2104.0 1.0451 1313.0, 12776.0 -0.8
A/J f 13072.0 3434.0   5 1536.0 0.2627 7314.0, 15766.0 -0.27
A/J m 7153.0 2030.0   5 907.8 0.2838 5667.0, 10523.0 -0.52
C57BL/6J f 17364.0 6264.0   5 2802.0 0.3608 12287.0, 26497.0 0.08
C57BL/6J m 3859.0 1576.0   5 704.7 0.4083 2685.0, 6530.0 -0.86
CAST/EiJ f 44038.0 0.0   1   0.0 0.0 44038.0, 44038.0 2.26
CAST/EiJ m 33916.0 20607.0   3 11898.0 0.6076 17195.0, 56938.0 2.26
DBA/2J f 20508.0 6672.0   5 2984.0 0.3253 14986.0, 31819.0 0.34
DBA/2J m 16510.0 2556.0   5 1143.0 0.1548 13622.0, 19518.0 0.45
NOD/ShiLtJ f 10286.0 3099.0   6 1265.0 0.3013 7595.0, 15903.0 -0.49
NOD/ShiLtJ m 11059.0 2956.0   5 1322.0 0.2673 6417.0, 14310.0 -0.11
NZO/HlLtJ f 5745.0 903.8   4 451.9 0.1573 4639.0, 6723.0 -0.86
NZO/HlLtJ m 7151.0 4607.0   5 2060.0 0.6443 3411.0, 15018.0 -0.52
PWK/PhJ f 23440.0 6798.0   5 3040.0 0.29 17909.0, 35191.0 0.58
PWK/PhJ m 18500.0 5569.0   5 2490.0 0.301 10515.0, 25963.0 0.66
WSB/EiJ f 6103.0 784.8   3 453.1 0.1286 5294.0, 6861.0 -0.83
WSB/EiJ m 6779.0 2360.0   5 1056.0 0.3482 2930.0, 8459.0 -0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6355.2 1875.4677036604 10104.2065207331 2606.1934792669
129S1/SvImJ m 4502.0 1875.4677036604 8251.0065207331 752.9934792669
A/J f 13072.2 1875.4677036604 16821.2065207331 9323.1934792669
A/J m 7152.8 1875.4677036604 10901.8065207331 3403.7934792669
C57BL/6J f 17363.6 1875.4677036604 21112.6065207331 13614.5934792669
C57BL/6J m 3859.2 1875.4677036604 7608.2065207331 110.1934792669
DBA/2J f 20508.2 1875.4677036604 24257.2065207331 16759.1934792669
DBA/2J m 16509.6 1875.4677036604 20258.6065207331 12760.5934792669
NOD/ShiLtJ f 10286.5 1712.0599452787 13708.8590660658 6864.1409339342
NOD/ShiLtJ m 11059.2 1875.4677036604 14808.2065207331 7310.1934792669
NZO/HlLtJ f 5744.75 2096.836637495 9936.2667142246 1553.2332857754
NZO/HlLtJ m 7150.6 1875.4677036604 10899.6065207331 3401.5934792669
PWK/PhJ f 23440.0 1875.4677036604 27189.0065207331 19690.9934792669
PWK/PhJ m 18500.0 1875.4677036604 22249.0065207331 14750.9934792669
WSB/EiJ f 6103.3333333333 2421.2183942088 10943.2799398741 1263.3867267926
WSB/EiJ m 6779.0 1875.4677036604 10528.0065207331 3029.9934792669


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5428.6 1326.1559311546 8079.547933523 2777.6520664771
A/J both 10112.5 1326.1559311546 12763.447933523 7461.5520664771
C57BL/6J both 10611.4 1326.1559311546 13262.3479335229 7960.4520664771
DBA/2J both 18508.9 1326.1559311546 21159.847933523 15857.9520664771
NOD/ShiLtJ both 10672.85 1269.6976375993 13210.9394128055 8134.7605871945
NZO/HlLtJ both 6447.675 1406.6007777453 9259.4298905498 3635.9201094502
PWK/PhJ both 20970.0 1326.1559311546 23620.9479335229 18319.0520664771
WSB/EiJ both 6441.1666666667 1531.3129676791 9502.217672721 3380.1156606124




  GWAS USING LINEAR MIXED MODELS