Project measure / variable:   CSNA03   trial_init_latency_in_acq_Binghamton

ID, description, units MPD:112885   trial_init_latency_in_acq_Binghamton   mean latency (across trials) between illumination of central hole and initiation of trial (reversal learning assay), founders   [centiseconds/n]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
Ontology mappings

  STRAIN COMPARISON PLOT
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CSNA03 - mean latency (across trials) between illumination of central hole and initiation of trial (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means663.3   centiseconds/n 450.2   centiseconds/n
Median of the strain means458.8   centiseconds/n 328.2   centiseconds/n
SD of the strain means± 384.3 ± 296.6
Coefficient of variation (CV)0.5794 0.6588
Min–max range of strain means352.7   –   1280.0   centiseconds/n 165.8   –   990.8   centiseconds/n
Mean sample size per strain6.1   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1034951.0763 1034951.0763 3.944 0.0508
strain 7 7470143.433 1067163.3476 4.0667 0.0008
sex:strain 7 2436905.391 348129.3416 1.3267 0.2502
Residuals 73 19156097.3459 262412.2924


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 662.5 342.2   7 129.3 0.5165 208.0, 1115.0 0.0
129S1/SvImJ m 815.4 550.4   5 246.2 0.675 103.3, 1521.0 1.23
A/J f 1280.0 935.8   6 382.0 0.7312 238.0, 2714.0 1.6
A/J m 990.8 761.2   6 310.7 0.7682 281.6, 2153.0 1.82
C57BL/6J f 468.5 249.3   6 101.8 0.5321 159.4, 859.6 -0.51
C57BL/6J m 308.6 62.17   6 25.381 0.2014 194.1, 367.8 -0.48
CAST/EiJ f 397.8 228.4   7 86.34 0.5742 195.0, 825.4 -0.69
CAST/EiJ m 458.2 157.3   4 78.65 0.3433 344.9, 689.8 0.03
NOD/ShiLtJ f 449.1 216.8   5 96.94 0.4827 158.3, 668.8 -0.56
NOD/ShiLtJ m 332.8 109.6   5 49.005 0.3293 168.2, 409.3 -0.4
NZO/HlLtJ f 1257.0 1096.0   7 414.1 0.8717 189.5, 2704.0 1.54
NZO/HlLtJ m 206.6 34.252   4 17.126 0.1658 160.2, 241.7 -0.82
PWK/PhJ f 352.7 509.0   6 207.8 1.4433 108.8, 1389.0 -0.81
PWK/PhJ m 165.8 71.63   6 29.245 0.4322 73.96, 247.4 -0.96
WSB/EiJ f 439.1 319.8   5 143.0 0.7283 153.2, 986.2 -0.58
WSB/EiJ m 323.6 160.2   4 80.1 0.4951 184.7, 525.6 -0.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 662.5 193.6168131755 1048.3777521828 276.6222478172
129S1/SvImJ m 815.4 229.0905028192 1271.9767136873 358.8232863127
A/J f 1279.85 209.1300601738 1696.6456088636 863.0543911364
A/J m 990.8166666667 209.1300601738 1407.6122755302 574.0210578031
C57BL/6J f 468.4833333333 209.1300601738 885.2789421969 51.6877244698
C57BL/6J m 308.6166666667 209.1300601738 725.4122755302 -108.1789421969
CAST/EiJ f 397.7857142857 193.6168131755 783.6634664685 11.9079621029
CAST/EiJ m 458.175 256.1309686517 968.6432843742 -52.2932843742
NOD/ShiLtJ f 449.12 229.0905028192 905.6967136873 -7.4567136873
NOD/ShiLtJ m 332.76 229.0905028192 789.3367136873 -123.8167136873
NZO/HlLtJ f 1256.8428571429 193.6168131755 1642.7206093257 870.96510496
NZO/HlLtJ m 206.6 256.1309686517 717.0682843742 -303.8682843742
PWK/PhJ f 352.65 209.1300601738 769.4456088636 -64.1456088636
PWK/PhJ m 165.75 209.1300601738 582.5456088636 -251.0456088636
WSB/EiJ f 439.1 229.0905028192 895.6767136873 -17.4767136873
WSB/EiJ m 323.575 256.1309686517 834.0432843742 -186.8932843742


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 738.95 149.9749385949 1037.8496215752 440.0503784248
A/J both 1135.3333333333 147.8772836988 1430.0523347295 840.6143319371
C57BL/6J both 388.55 147.8772836988 683.2690013962 93.8309986038
CAST/EiJ both 427.9803571429 160.5385806019 747.9332868769 108.0274274088
NOD/ShiLtJ both 390.94 161.9914480489 713.7884903802 68.0915096198
NZO/HlLtJ both 731.7214285714 160.5385806019 1051.6743583055 411.7684988374
PWK/PhJ both 259.2 147.8772836988 553.9190013962 -35.5190013962
WSB/EiJ both 381.3375 171.8178771144 723.7700352655 38.9049647345




  GWAS USING LINEAR MIXED MODELS