Project measure / variable:   CSNA03   correct_in_acq_Binghamton

ID, description, units MPD:112875   correct_in_acq_Binghamton   total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), founders   [n]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means48.875   n 52.47   n
Median of the strain means47.727   n 52.04   n
SD of the strain means± 8.7253 ± 9.6676
Coefficient of variation (CV)0.1785 0.1842
Min–max range of strain means38.0   –   67.0   n 39.667   –   67.25   n
Mean sample size per strain6.1   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 324.7 324.7 0.4404 0.509
strain 7 3087.4723 441.0675 0.5982 0.7554
sex:strain 7 2905.1821 415.026 0.5629 0.7836
Residuals 73 53824.6905 737.3245


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 42.714 14.716   7 5.5623 0.3445 26.0, 63.0 -0.71
129S1/SvImJ m 48.6 21.443   5 9.5896 0.4412 22.0, 74.0 -0.4
A/J f 48.5 30.807   6 12.577 0.6352 19.0, 106.0 -0.04
A/J m 63.0 25.784   6 10.526 0.4093 39.0, 104.0 1.09
C57BL/6J f 47.167 27.607   6 11.271 0.5853 16.0, 97.0 -0.2
C57BL/6J m 39.667 32.235   6 13.16 0.8126 16.0, 86.0 -1.32
CAST/EiJ f 48.286 20.122   7 7.6055 0.4167 18.0, 70.0 -0.07
CAST/EiJ m 67.25 19.5   4 9.75 0.29 51.0, 95.0 1.53
NOD/ShiLtJ f 38.0 25.308   5 11.318 0.666 17.0, 68.0 -1.25
NOD/ShiLtJ m 56.2 44.628   5 19.958 0.7941 18.0, 129.0 0.39
NZO/HlLtJ f 45.0 14.095   7 5.3274 0.3132 32.0, 65.0 -0.44
NZO/HlLtJ m 41.0 29.743   4 14.872 0.7254 16.0, 84.0 -1.19
PWK/PhJ f 54.33 35.562   6 14.518 0.6545 17.0, 112.0 0.63
PWK/PhJ m 52.33 36.8   6 15.024 0.7032 16.0, 111.0 -0.01
WSB/EiJ f 67.0 19.026   5 8.5088 0.284 47.0, 91.0 2.08
WSB/EiJ m 51.75 19.346   4 9.6728 0.3738 24.0, 69.0 -0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 42.7142857143 10.26314159 63.1686974057 22.2598740229
129S1/SvImJ m 48.6 12.1435128943 72.8019862966 24.3980137034
A/J f 48.5 11.0854598993 70.5932897184 26.4067102816
A/J m 63.0 11.0854598993 85.0932897184 40.9067102816
C57BL/6J f 47.1666666667 11.0854598993 69.2599563851 25.0733769482
C57BL/6J m 39.6666666667 11.0854598993 61.7599563851 17.5733769482
CAST/EiJ f 48.2857142857 10.26314159 68.7401259771 27.8313025943
CAST/EiJ m 67.25 13.5768601587 94.3086432748 40.1913567252
NOD/ShiLtJ f 38.0 12.1435128943 62.2019862966 13.7980137034
NOD/ShiLtJ m 56.2 12.1435128943 80.4019862966 31.9980137034
NZO/HlLtJ f 45.0 10.26314159 65.4544116914 24.5455883086
NZO/HlLtJ m 41.0 13.5768601587 68.0586432748 13.9413567252
PWK/PhJ f 54.3333333333 11.0854598993 76.4266230518 32.2400436149
PWK/PhJ m 52.3333333333 11.0854598993 74.4266230518 30.2400436149
WSB/EiJ f 67.0 12.1435128943 91.2019862966 42.7980137034
WSB/EiJ m 51.75 13.5768601587 78.8086432748 24.6913567252


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 45.6571428571 7.9497952915 61.5010620246 29.8132236897
A/J both 55.75 7.8386038674 71.3723149786 40.1276850214
C57BL/6J both 43.4166666667 7.8386038674 59.0389816453 27.794351688
CAST/EiJ both 57.7678571429 8.5097474561 74.7277593648 40.8079549209
NOD/ShiLtJ both 47.1 8.586760315 64.2133886285 29.9866113715
NZO/HlLtJ both 43.0 8.5097474561 59.959902222 26.040097778
PWK/PhJ both 53.3333333333 7.8386038674 68.955648312 37.7110183547
WSB/EiJ both 59.375 9.1076346707 77.5264897224 41.2235102776




  GWAS USING LINEAR MIXED MODELS