Project measure / variable:   Schoonjans1   kidney_wt_CD

ID, description, units MPD:112859   kidney_wt_CD   kidney weight (both)   [g]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 29wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Schoonjans1 - kidney weight (both) CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.43863   g
Median of the strain means0.445   g
SD of the strain means± 0.07801
Coefficient of variation (CV)0.1779
Min–max range of strain means0.296   –   0.596   g
Mean sample size per strain4.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 1.0157 0.029 11.4177 < 0.0001
Residuals 133 0.338 0.0025


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.40525 0.00899833   4 0.00449917 0.0222 0.3925, 0.4129 -0.43
BXD100 m 0.35113 0.03046   6 0.01244 0.0867 0.32, 0.4078 -1.12
BXD11 m 0.4175 0.035   4 0.0175 0.0838 0.38, 0.46 -0.27
BXD12 m 0.3784 0.04642   4 0.02321 0.1227 0.3211, 0.4326 -0.77
BXD27 m 0.4375 0.05123   4 0.02562 0.1171 0.37, 0.49 -0.01
BXD32 m 0.47 0.04848   5 0.02168 0.1031 0.41, 0.54 0.4
BXD34 m 0.56808 0.03916   5 0.01751 0.0689 0.5005, 0.5982 1.66
BXD39 m 0.444 0.06107   5 0.02731 0.1376 0.38, 0.53 0.07
BXD40 m 0.35962 0.04271   5 0.0191 0.1188 0.3022, 0.4169 -1.01
BXD43 m 0.31967 0.03372   3 0.01947 0.1055 0.281, 0.343 -1.52
BXD45 m 0.4625 0.03202   4 0.01601 0.0692 0.43, 0.49 0.31
BXD48 m 0.296 0.03209   5 0.01435 0.1084 0.25, 0.33 -1.83
BXD48a m 0.40333 0.02517   3 0.01453 0.0624 0.38, 0.43 -0.45
BXD49 m 0.49285 0.038   4 0.019 0.0771 0.4484, 0.541 0.7
BXD51 m 0.398 0.04324   5 0.01934 0.1087 0.36, 0.45 -0.52
BXD53 m 0.486 0.04278   5 0.01913 0.088 0.45, 0.56 0.61
BXD55 m 0.4652 0.04171   5 0.01865 0.0897 0.4136, 0.511 0.34
BXD6 m 0.33344 0.03543   5 0.01584 0.1062 0.3064, 0.3916 -1.35
BXD62 m 0.51526 0.03472   5 0.01553 0.0674 0.4677, 0.5586 0.98
BXD63 m 0.506 0.09209   5 0.04118 0.182 0.39, 0.63 0.86
BXD64 m 0.38667 0.0057735   3 0.00333333 0.0149 0.38, 0.39 -0.67
BXD66 m 0.47073 0.03109   7 0.01175 0.066 0.41, 0.506 0.41
BXD67 m 0.5125 0.04272   4 0.02136 0.0834 0.48, 0.57 0.95
BXD69 m 0.54716 0.08518   5 0.0381 0.1557 0.4414, 0.63 1.39
BXD73 m 0.47108 0.04202   5 0.01879 0.0892 0.41, 0.51 0.42
BXD75 m 0.494 0.01342   5 0.006 0.0272 0.48, 0.51 0.71
BXD77 m 0.5385 0.02609   5 0.01167 0.0485 0.4979, 0.5691 1.28
BXD79 m 0.37272 0.06551   5 0.0293 0.1758 0.2958, 0.4611 -0.84
BXD8 m 0.41 0.02236   5 0.01 0.0545 0.38, 0.44 -0.37
BXD81 m 0.35163 0.0591   4 0.02955 0.1681 0.2812, 0.4248 -1.12
BXD84 m 0.538 0.07596   5 0.03397 0.1412 0.42, 0.63 1.27
BXD87 m 0.3522 0.08551   5 0.03824 0.2428 0.273, 0.47 -1.11
BXD89 m 0.49 0.08337   5 0.03728 0.1701 0.39, 0.61 0.66
BXD90 m 0.446 0.02702   5 0.01208 0.0606 0.42, 0.49 0.09
C57BL/6J m 0.3036 0.02309   5 0.01033 0.0761 0.2754, 0.3316 -1.73
DBA/2J m 0.596 0.0882   5 0.03945 0.148 0.53, 0.75 2.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.40525 0.0252077445 0.4551099421 0.3553900579
BXD100 m 0.3511333333 0.0205820372 0.3918438056 0.3104228611
BXD11 m 0.4175 0.0252077445 0.4673599421 0.3676400579
BXD12 m 0.3784 0.0252077445 0.4282599421 0.3285400579
BXD27 m 0.4375 0.0252077445 0.4873599421 0.3876400579
BXD32 m 0.47 0.0225464921 0.514596088 0.425403912
BXD34 m 0.56808 0.0225464921 0.612676088 0.523483912
BXD39 m 0.444 0.0225464921 0.488596088 0.399403912
BXD40 m 0.35962 0.0225464921 0.404216088 0.315023912
BXD43 m 0.3196666667 0.0291073961 0.3772399687 0.2620933646
BXD45 m 0.4625 0.0252077445 0.5123599421 0.4126400579
BXD48 m 0.296 0.0225464921 0.340596088 0.251403912
BXD48a m 0.4033333333 0.0291073961 0.4609066354 0.3457600313
BXD49 m 0.49285 0.0252077445 0.5427099421 0.4429900579
BXD51 m 0.398 0.0225464921 0.442596088 0.353403912
BXD53 m 0.486 0.0225464921 0.530596088 0.441403912
BXD55 m 0.4652 0.0225464921 0.509796088 0.420603912
BXD6 m 0.33344 0.0225464921 0.378036088 0.288843912
BXD62 m 0.51526 0.0225464921 0.559856088 0.470663912
BXD63 m 0.506 0.0225464921 0.550596088 0.461403912
BXD64 m 0.3866666667 0.0291073961 0.4442399687 0.3290933646
BXD66 m 0.4707285714 0.0190552637 0.5084191449 0.4330379979
BXD67 m 0.5125 0.0252077445 0.5623599421 0.4626400579
BXD69 m 0.54716 0.0225464921 0.591756088 0.502563912
BXD73 m 0.47108 0.0225464921 0.515676088 0.426483912
BXD75 m 0.494 0.0225464921 0.538596088 0.449403912
BXD77 m 0.5385 0.0225464921 0.583096088 0.493903912
BXD79 m 0.37272 0.0225464921 0.417316088 0.328123912
BXD8 m 0.41 0.0225464921 0.454596088 0.365403912
BXD81 m 0.351625 0.0252077445 0.4014849421 0.3017650579
BXD84 m 0.538 0.0225464921 0.582596088 0.493403912
BXD87 m 0.3522 0.0225464921 0.396796088 0.307603912
BXD89 m 0.49 0.0225464921 0.534596088 0.445403912
BXD90 m 0.446 0.0225464921 0.490596088 0.401403912
C57BL/6J m 0.3036 0.0225464921 0.348196088 0.259003912
DBA/2J m 0.596 0.0225464921 0.640596088 0.551403912




  GWAS USING LINEAR MIXED MODELS